Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 2.7e-197 691.8 347 100.0
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 2.0e-139 499.6 348 77.0
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 4.8e-138 495.0 348 76.7
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 7.0e-121 438.0 322 72.4
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 1.6e-77 293.9 236 68.6
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 3.2e-73 279.6 348 48.6
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 4.6e-72 275.8 350 50.3
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 8.6e-71 271.6 350 49.7
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 2.5e-70 270.0 351 49.6
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 5.6e-70 268.9 342 46.5
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 7.3e-70 268.5 355 47.0
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 9.6e-70 268.1 335 50.1
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 1.6e-69 267.3 344 45.6
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 6.2e-69 265.4 348 47.1
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 8.1e-69 265.0 354 47.7
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 3.1e-68 263.1 372 48.4
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 3.1e-68 263.1 372 48.4
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 4.4e-67 259.2 390 43.6
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 5.8e-67 258.8 353 48.2
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 1.3e-66 257.7 344 48.3
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.7e-66 257.3 351 46.2
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 2.2e-66 256.9 341 48.7
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 2.9e-66 256.5 335 49.0
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 4.9e-66 255.8 342 45.9
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 1.4e-65 254.2 347 45.5
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 1.4e-65 254.2 356 47.8
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 2.4e-65 253.4 350 45.4
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 2.7e-64 250.0 350 45.4
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 1.3e-63 247.7 393 39.2
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 3.3e-62 243.0 342 43.0
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 1.6e-61 240.7 339 44.0
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 3.6e-61 239.6 343 44.9
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 4.8e-61 239.2 319 47.6
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 8.1e-61 238.4 276 52.5
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 4.0e-60 236.1 338 43.8
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 4.0e-60 236.1 391 40.4
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 9.0e-60 235.0 396 40.7
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 1.5e-59 234.2 338 42.3
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 2.6e-59 233.4 338 42.0
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 4.9e-58 229.2 342 42.1
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 5.4e-57 225.7 375 40.5
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 1.2e-56 224.6 408 39.5
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 1.2e-56 224.6 357 40.9
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 2.7e-56 223.4 190 62.6
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 2.7e-56 223.4 344 40.7
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 3.5e-56 223.0 246 50.4
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 4.6e-56 222.6 353 40.2
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 1.3e-55 221.1 252 49.2
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 8.7e-55 218.4 358 40.5
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 3.3e-54 216.5 367 39.8
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 4.3e-54 216.1 359 43.2
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 7.3e-54 215.3 347 40.1
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 1.6e-53 214.2 348 39.7
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 4.8e-53 212.6 357 38.7
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 6.2e-53 212.2 355 38.6
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 1.8e-52 210.7 355 38.9
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 1.5e-51 207.6 355 41.4
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 1.5e-51 207.6 390 38.5
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 2.0e-51 207.2 216 50.9
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 2.6e-51 206.8 324 39.5
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 7.6e-51 205.3 354 40.7
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 9.9e-51 204.9 388 38.7
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 2.2e-50 203.8 395 35.7
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 2.9e-50 203.4 339 39.2
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 2.9e-50 203.4 341 41.1
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 3.8e-50 203.0 314 41.7
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 6.4e-50 202.2 339 37.8
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 6.4e-50 202.2 255 47.1
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 1.1e-49 201.4 386 35.8
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 5.4e-49 199.1 230 50.9
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 1.2e-48 198.0 348 38.5
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 1.6e-48 197.6 377 35.5
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.6e-48 197.6 286 43.0
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 3.5e-48 196.4 223 46.2
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 3.5e-48 196.4 360 38.1
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 4.6e-48 196.1 376 37.0
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 7.9e-48 195.3 179 56.4
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 1.0e-47 194.9 231 47.2
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 1.0e-47 194.9 190 53.7
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 1.3e-47 194.5 223 46.2
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 1.3e-47 194.5 223 45.7
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 1.3e-47 194.5 308 39.0
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 3.9e-47 193.0 307 41.7
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 6.7e-47 192.2 346 39.3
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 8.7e-47 191.8 221 46.6
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 2.5e-46 190.3 394 33.8
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 3.3e-46 189.9 370 37.0
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 9.6e-46 188.3 348 38.5
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 9.6e-46 188.3 196 53.6
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 1.3e-45 188.0 209 47.8
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 3.7e-45 186.4 273 42.5
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 6.2e-45 185.7 391 33.2
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 6.2e-45 185.7 362 37.3
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 8.1e-45 185.3 186 52.2
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 1.5e-43 181.0 259 41.7
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 7.6e-43 178.7 250 43.6
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 3.8e-42 176.4 182 48.4
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 6.0e-40 169.1 136 64.0
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 1.4e-36 157.9 178 51.1
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 1.0e-34 151.8 235 43.8
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 1.5e-30 137.9 314 32.8
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 1.4e-28 131.3 156 45.5
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 1.3e-21 108.2 140 38.6
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 6.9e-20 102.4 100 48.0
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 1.0e-18 98.6 183 31.1
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 1.3e-18 98.2 179 33.0
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 9.4e-17 92.0 208 36.5
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 6.1e-16 89.4 105 41.0
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 2.1e-08 64.3 196 26.5
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 8.8e-07 58.9 76 44.7
MSTRG.15811 Avicennia marina HOM05D006765 ORTHO05D008554 3.3e-06 57.0 182 27.5


User provided reference genes

Program Settings