Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 2.5e-209 731.9 374 100.0
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 6.5e-157 557.8 370 80.8
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 1.8e-127 459.9 365 70.1
MELO3C024948.2 Cucumis melo HOM05D031146 ORTHO05D003355 2.7e-118 429.5 276 81.5
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 9.4e-39 165.2 404 34.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 4.5e-33 146.4 401 32.9
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.2e-30 138.3 398 32.4
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 2.6e-28 130.6 419 32.7
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.8e-26 124.4 408 31.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.1e-26 123.6 393 29.5
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 3.1e-26 123.6 393 29.3
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.1e-26 123.2 391 30.9
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 2.0e-25 120.9 383 31.3
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 6.5e-24 115.9 417 29.0
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.8e-21 107.8 400 28.2
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 2.3e-21 107.5 377 30.5
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 2.3e-21 107.5 347 30.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.3e-21 107.5 385 30.1
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.3e-21 107.5 418 26.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.2e-21 106.3 398 27.9
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.2e-20 105.1 395 28.6
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.5e-20 104.8 216 34.7
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.5e-20 104.8 405 26.7
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 2.0e-20 104.4 402 28.1
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 3.4e-20 103.6 374 27.0
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 4.4e-20 103.2 374 29.1
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.2e-19 100.9 399 28.8
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 3.7e-19 100.1 405 26.7
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 4.8e-19 99.8 347 30.8
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 1.4e-18 98.2 406 28.1
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.8e-18 97.8 383 27.7
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 4.1e-18 96.7 276 32.2
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 4.1e-18 96.7 425 25.6
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.5e-17 93.6 392 27.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.0e-16 92.0 393 29.5
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 2.3e-16 90.9 398 28.1
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 9.5e-15 85.5 399 25.1
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 3.6e-14 83.6 161 34.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 6.1e-14 82.8 121 38.8
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 8.0e-14 82.4 346 27.7
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-13 81.6 113 42.5
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.4e-13 81.6 371 28.6
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.8e-13 81.3 383 27.4
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 4.0e-13 80.1 87 48.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 6.8e-13 79.3 87 44.8
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 6.8e-13 79.3 104 45.2
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.0e-12 77.8 112 41.1
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 2.0e-12 77.8 395 26.3
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.0e-12 77.8 142 35.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.6e-12 77.4 116 39.7
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.4e-12 77.0 419 26.3
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 9.8e-12 75.5 409 28.1
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.8e-12 75.5 112 40.2
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.3e-11 75.1 112 40.2
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 1.7e-11 74.7 228 31.6
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.7e-11 74.7 271 27.3
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 2.2e-11 74.3 373 24.7
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 2.4e-10 70.9 113 34.5
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 5.4e-10 69.7 387 25.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 9.2e-10 68.9 105 34.3
FAN19G1520 Fragaria x ananassa HOM05D014719 ORTHO05D003355 2.0e-09 67.8 388 27.8
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 2.7e-09 67.4 119 36.1
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 2.7e-09 67.4 280 26.8
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 3.5e-09 67.0 119 35.3
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 5.9e-09 66.2 268 27.6
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 7.8e-09 65.9 109 35.8
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 1.0e-08 65.5 281 27.0
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.0e-08 65.5 119 36.1
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.3e-08 65.1 267 30.0
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.3e-08 65.1 122 32.0
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 2.3e-08 64.3 138 28.3
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 6.6e-08 62.8 116 32.8
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 6.6e-08 62.8 116 32.8
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 6.6e-08 62.8 279 25.8
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.6e-08 62.8 116 35.3
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.6e-08 62.8 39 64.1
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.6e-08 62.8 39 64.1
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 6.6e-08 62.8 83 41.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 6.6e-08 62.8 83 41.0
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 8.6e-08 62.4 100 38.0
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-07 62.0 59 49.2
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 1.5e-07 61.6 116 32.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.9e-07 61.2 90 36.7
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 2.5e-07 60.8 81 39.5
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 5.6e-07 59.7 104 29.8
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 2.8e-06 57.4 90 38.9
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.8e-06 57.4 85 38.8
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 4.7e-06 56.6 89 33.7
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 4.7e-06 56.6 405 27.9
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 4.7e-06 56.6 86 37.2
FAN28G3008 Fragaria x ananassa HOM05D014719 ORTHO05D003355 6.1e-06 56.2 363 26.2
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 6.1e-06 56.2 77 36.4
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.1e-06 56.2 129 29.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 8.0e-06 55.8 126 31.7


User provided reference genes

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