Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 0.0e+00 2765.3 1543 100.0
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 0.0e+00 2086.6 1535 77.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 0.0e+00 2085.8 1545 79.8
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1659.0 1701 61.6
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 0.0e+00 1228.8 1309 62.0
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.4e-120 439.1 1793 32.3
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.4e-104 385.2 832 42.9
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.3e-102 379.4 905 39.2
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.2e-102 378.6 1721 31.1
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 3.0e-99 368.2 921 40.8
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.3e-97 362.8 1584 32.0
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-94 352.4 1631 30.4
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.7e-92 345.1 1572 29.7
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 8.0e-92 343.6 647 40.5
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.3e-89 336.3 1597 30.9
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.8e-89 335.1 834 39.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.7e-86 325.9 1230 34.1
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.8e-86 324.7 1753 29.7
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.2e-85 321.2 816 40.4
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 8.0e-84 317.0 643 44.3
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 8.0e-84 317.0 1630 28.8
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.3e-83 315.5 1628 29.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.0e-83 315.1 1256 32.8
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 8.8e-83 313.5 1628 29.5
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 3.3e-82 311.6 870 41.5
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 7.5e-82 310.5 1630 29.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.0e-78 300.1 1745 30.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.2e-78 298.9 613 46.5
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.9e-78 298.5 1636 29.2
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.9e-77 295.8 648 45.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.2e-76 293.1 647 45.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.8e-75 289.3 1774 30.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.8e-75 289.3 1612 29.2
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 6.8e-75 287.3 1623 30.6
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.8e-75 287.3 1679 30.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 9.1e-72 276.9 1176 30.0
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 1.6e-71 276.2 1630 29.8
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 4.0e-67 261.5 602 42.5
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.8e-65 255.4 651 41.0
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 6.3e-65 254.2 634 39.0
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.4e-64 253.1 612 41.7
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.7e-62 246.1 351 46.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.7e-62 246.1 654 41.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 3.9e-62 245.0 623 38.0
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.1e-61 243.4 1560 27.8
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.6e-61 241.1 648 39.5
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 8.0e-60 237.3 1702 27.9
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.0e-59 236.9 672 38.2
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.8e-59 236.1 1609 26.9
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 2.0e-58 232.6 628 37.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.7e-57 229.6 516 47.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 3.7e-57 228.4 633 37.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.9e-56 226.1 633 37.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 4.1e-56 224.9 662 36.9
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 7.0e-56 224.2 937 36.4
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.6e-55 223.0 1647 27.7
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.6e-55 221.5 652 37.4
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.0e-54 220.3 600 32.5
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.7e-54 219.5 824 31.8
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.0e-54 218.0 668 37.6
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.6e-54 217.6 1587 28.3
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-53 216.5 460 45.7
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 4.3e-53 214.9 654 41.0
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 6.2e-52 211.1 1652 27.3
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.1e-51 210.3 1671 26.9
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 5.2e-51 208.0 1545 28.2
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.2e-50 206.8 1584 27.2
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.6e-50 205.7 1607 27.4
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.7e-49 201.8 461 49.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.9e-48 199.5 651 37.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 5.4e-48 198.0 1597 27.1
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 9.2e-48 197.2 656 35.4
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.6e-47 196.4 683 40.6
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.7e-47 195.7 726 39.9
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 6.0e-47 194.5 669 39.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.7e-46 193.0 1417 24.6
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 3.9e-46 191.8 714 38.9
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.6e-46 191.0 461 36.0
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.1e-45 190.3 688 39.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 9.5e-45 187.2 1550 27.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.2e-42 180.3 476 33.8
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.0e-42 179.5 651 36.6
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.9e-40 172.9 1584 25.6
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.9e-40 172.9 629 37.2
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 2.1e-39 169.5 466 33.3
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 2.1e-39 169.5 466 33.3
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.0e-39 167.9 665 32.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 7.8e-39 167.5 467 32.3
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 5.1e-38 164.9 671 34.0
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 8.6e-38 164.1 1328 25.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-37 163.3 1585 27.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 7.3e-37 161.0 636 36.2
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-36 159.8 617 27.4
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 2.8e-36 159.1 677 36.6
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.8e-36 159.1 1550 26.1
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 4.7e-36 158.3 1591 25.7
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 4.7e-36 158.3 609 30.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.1e-35 157.1 621 28.2
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.4e-35 156.0 682 31.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.2e-34 153.7 610 31.5
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.4e-34 152.1 640 32.5
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-33 149.8 630 31.1
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.8e-33 148.7 813 31.7
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 4.9e-33 148.3 307 35.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.4e-32 146.0 1186 26.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.7e-31 142.5 717 29.6
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.5e-29 136.0 666 35.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 5.6e-29 134.8 288 35.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.6e-28 132.1 652 33.6
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.9e-25 122.5 1666 26.1
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.4e-24 120.2 385 31.9
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 4.2e-24 118.6 693 33.3
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.1e-23 116.3 424 29.7
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.2e-17 96.3 246 34.1
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-16 92.4 85 62.4
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.7e-15 89.4 372 29.0
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.7e-15 89.4 1660 23.1
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.1e-12 77.8 96 38.5
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.1e-11 77.4 389 28.5
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.4e-11 77.0 632 24.8
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.4e-10 72.4 274 41.2
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 5.8e-10 71.6 67 62.7
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-09 69.7 67 61.2
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 2.9e-09 69.3 71 47.9
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.9e-09 68.6 110 39.1
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 4.9e-09 68.6 139 38.8
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.4e-08 67.0 386 26.7
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.6e-07 63.5 53 67.9
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 2.1e-07 63.2 564 33.7
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 1.3e-06 60.5 57 63.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.3e-06 59.7 270 36.7


User provided reference genes

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