Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 4.8e-73 277.7 138 100.0
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 7.2e-69 263.8 138 94.2
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 8.8e-67 256.9 138 92.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 4.8e-65 251.1 139 90.6
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 1.8e-59 232.6 139 84.9
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 1.7e-46 189.5 141 71.6
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 2.2e-46 189.1 141 72.3
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.9e-46 188.7 141 69.5
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 2.9e-46 188.7 141 69.5
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 2.9e-46 188.7 142 69.7
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.8e-46 188.3 139 69.1
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 3.8e-46 188.3 142 69.0
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 5.0e-46 188.0 140 72.9
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 6.5e-46 187.6 143 70.6
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 6.5e-46 187.6 141 71.6
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.5e-45 185.7 141 66.7
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.2e-45 184.1 141 68.1
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.2e-44 183.3 140 72.1
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.6e-44 183.0 145 69.0
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.1e-44 182.6 141 70.2
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 2.7e-44 182.2 141 68.1
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 2.7e-44 182.2 141 68.1
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 2.7e-44 182.2 140 66.4
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 3.6e-44 181.8 142 69.0
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 1.0e-43 180.3 141 70.9
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.0e-43 180.3 143 70.6
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 1.4e-43 179.9 146 65.8
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 3.0e-43 178.7 138 65.2
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 3.0e-43 178.7 140 67.1
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 5.2e-43 177.9 143 65.0
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.2e-43 177.9 143 65.0
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 6.8e-43 177.6 144 66.7
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 8.8e-43 177.2 140 66.4
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 1.5e-42 176.4 143 65.0
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 1.5e-42 176.4 143 67.1
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 2.0e-42 176.0 143 67.1
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 3.4e-42 175.3 123 74.0
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 3.4e-42 175.3 147 65.3
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 4.4e-42 174.9 140 67.9
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 5.7e-42 174.5 142 64.1
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 5.7e-42 174.5 142 66.2
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 5.7e-42 174.5 139 66.9
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.7e-41 172.9 143 63.6
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 2.8e-41 172.2 139 67.6
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 3.7e-41 171.8 140 67.9
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 4.8e-41 171.4 143 62.9
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 4.8e-41 171.4 143 62.9
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 6.3e-41 171.0 143 65.0
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 1.1e-40 170.2 144 64.6
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 1.8e-40 169.5 149 66.4
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 5.4e-40 167.9 140 64.3
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 5.4e-40 167.9 141 61.0
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 7.0e-40 167.5 141 65.2
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 9.1e-40 167.2 141 61.7
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.0e-39 166.0 139 63.3
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 2.0e-39 166.0 142 64.1
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.7e-39 165.6 140 64.3
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 2.7e-39 165.6 145 66.2
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 2.7e-39 165.6 143 65.0
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 3.5e-39 165.2 128 69.5
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 4.5e-39 164.9 140 64.3
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 7.7e-39 164.1 139 64.0
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 7.7e-39 164.1 142 62.7
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 1.7e-38 162.9 139 64.0
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.7e-38 162.9 139 61.2
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 2.9e-38 162.2 140 62.9
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 5.0e-38 161.4 143 63.6
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 5.0e-38 161.4 140 60.0
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 4.2e-37 158.3 139 61.2
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 7.2e-37 157.5 127 64.6
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 1.2e-36 156.8 142 61.3
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.2e-36 156.8 141 63.1
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 2.7e-36 155.6 126 66.7
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 6.1e-36 154.5 141 62.4
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 1.0e-35 153.7 140 61.4
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 1.4e-35 153.3 121 66.1
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 1.8e-35 152.9 141 56.7
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 1.8e-35 152.9 141 61.0
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.8e-35 152.9 132 63.6
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 2.3e-35 152.5 127 66.9
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 3.0e-35 152.1 142 62.0
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.0e-34 149.4 124 68.5
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 7.5e-34 147.5 139 57.6
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.7e-33 145.2 139 56.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 3.7e-33 145.2 143 60.8
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 4.9e-33 144.8 135 62.2
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 1.1e-32 143.7 130 63.8
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 1.8e-32 142.9 143 59.4
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 1.8e-32 142.9 140 56.4
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 2.4e-32 142.5 132 60.6
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 3.1e-32 142.1 131 59.5
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.1e-32 142.1 143 59.4
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 3.1e-32 142.1 143 58.7
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 5.4e-32 141.4 123 64.2
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 9.1e-32 140.6 121 60.3
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.2e-31 140.2 145 58.6
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 1.6e-31 139.8 143 56.6
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 2.7e-31 139.0 123 61.0
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 3.5e-31 138.7 126 58.7
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 3.5e-31 138.7 126 58.7
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 3.5e-31 138.7 143 55.9
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 5.9e-31 137.9 125 56.8
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 5.0e-30 134.8 143 55.2
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 6.6e-30 134.4 124 62.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 4.2e-29 131.7 143 53.8
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 5.5e-29 131.3 151 54.3
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 1.6e-28 129.8 132 57.6
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 6.1e-28 127.9 132 57.6
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 1.8e-27 126.3 132 56.1
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 3.0e-27 125.6 134 59.0
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 4.0e-27 125.2 120 59.2
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 1.5e-26 123.2 91 71.4
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.8e-26 120.6 122 53.3
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 4.9e-25 118.2 121 56.2
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 2.4e-24 115.9 145 51.0
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 2.0e-23 112.8 88 63.6
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.0e-22 110.5 121 50.4
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 1.7e-22 109.8 146 47.9
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 5.0e-22 108.2 97 62.9
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 8.6e-22 107.5 133 48.1
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 8.6e-22 107.5 132 47.7
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.5e-21 106.7 126 52.4
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 7.3e-21 104.4 139 43.9
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 3.7e-17 92.0 153 42.5
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.2e-15 87.0 101 53.5
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 4.6e-15 85.1 101 52.5
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.5e-13 77.4 108 45.4
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 1.6e-07 60.1 53 52.8
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.6e-07 60.1 43 62.8
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 4.6e-07 58.5 98 39.8
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 6.0e-07 58.2 83 42.2
CBR_g27765 Chara braunii HOM05D005924 ORTHO05D007290 1.0e-06 57.4 129 34.1
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 1.3e-06 57.0 83 43.4
AagrBONN_evm.TU.Sc2ySwM_340.382 Anthoceros agrestis HOM05D005924 ORTHO05D007290 3.0e-06 55.8 141 33.3


User provided reference genes

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