Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 8.5e-203 710.7 531 100.0
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.3e-170 602.4 531 83.4
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 8.9e-168 594.3 530 87.9
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 8.4e-142 508.1 557 77.7
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 5.7e-98 362.5 520 66.0
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.3e-94 351.3 529 64.3
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 3.2e-93 346.7 482 72.0
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.4e-91 341.3 525 62.7
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 1.8e-91 340.9 529 62.6
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.6e-90 337.0 536 61.9
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.3e-90 336.7 525 62.5
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 7.5e-90 335.5 525 62.7
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 7.5e-90 335.5 525 62.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.7e-90 335.1 525 62.7
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 9.7e-90 335.1 525 61.9
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.8e-89 333.6 494 69.4
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 2.8e-89 333.6 525 66.7
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.1e-88 331.6 477 72.5
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 7.0e-88 328.9 498 70.9
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 2.0e-87 327.4 527 61.7
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.0e-86 325.1 542 63.8
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 2.2e-86 323.9 542 64.0
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.9e-86 323.6 548 64.4
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 1.9e-85 320.9 542 61.1
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.2e-85 320.1 537 60.7
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 1.2e-84 318.2 477 65.6
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.2e-84 318.2 497 66.2
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 4.7e-84 316.2 531 60.8
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 6.1e-84 315.8 490 68.2
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 6.1e-84 315.8 491 67.2
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.8e-83 314.3 490 64.1
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.8e-83 314.3 490 64.1
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.3e-83 313.9 503 67.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 5.2e-83 312.8 485 64.5
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.2e-82 311.6 490 63.3
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.0e-82 310.8 485 64.3
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.4e-82 310.1 535 60.9
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 4.4e-82 309.7 534 59.6
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.3e-81 308.1 377 79.3
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.7e-81 306.6 532 60.3
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 4.8e-81 306.2 488 68.9
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.3e-81 305.8 485 63.9
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.1e-80 305.1 522 64.9
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 1.1e-80 305.1 486 66.3
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.4e-80 303.9 469 68.0
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 5.4e-80 302.8 487 66.9
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.6e-79 301.2 516 65.9
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.7e-79 300.4 487 66.1
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 7.7e-79 298.9 483 62.5
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 1.7e-78 297.7 467 67.7
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 2.9e-78 297.0 486 52.5
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.5e-77 294.7 486 65.6
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.9e-77 294.3 532 61.8
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.6e-76 291.2 530 63.0
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 2.8e-76 290.4 533 61.5
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.6e-76 290.0 488 62.3
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 3.6e-76 290.0 534 59.0
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 6.1e-76 289.3 509 55.8
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 8.0e-76 288.9 513 61.4
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 5.2e-75 286.2 520 62.3
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.2e-74 285.0 476 66.2
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 1.5e-74 284.6 475 64.0
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 2.6e-74 283.9 483 60.7
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 3.4e-74 283.5 520 59.6
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.7e-73 281.2 502 56.6
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 1.7e-73 281.2 479 59.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 3.7e-73 280.0 541 56.0
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 4.9e-73 279.6 513 60.8
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 9.2e-72 275.4 533 60.6
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.0e-71 274.2 356 71.1
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 7.8e-71 272.3 483 57.3
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.7e-70 271.2 336 78.3
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 5.0e-70 269.6 481 61.1
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.5e-69 268.1 476 62.8
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 5.6e-69 266.2 538 58.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 1.8e-67 261.2 488 60.2
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.3e-67 260.8 415 65.3
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 2.3e-67 260.8 477 61.4
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 8.9e-67 258.8 491 55.0
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 8.9e-67 258.8 490 61.0
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.5e-66 258.1 458 62.7
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.3e-65 255.0 491 57.2
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.1e-64 250.0 338 75.7
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.6e-63 248.1 503 57.1
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.5e-63 246.9 480 56.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.3e-62 245.0 429 62.9
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 1.7e-62 244.6 481 60.5
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.3e-62 244.2 512 59.8
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.9e-61 241.1 488 58.6
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 5.6e-61 239.6 545 56.5
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.0e-59 235.3 512 53.5
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.8e-59 232.6 497 60.0
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.4e-56 224.9 293 78.8
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.2e-52 211.8 504 57.7
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.1e-51 208.8 464 59.3
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 7.8e-47 192.6 293 77.1
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 5.1e-46 189.9 245 48.6
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 5.1e-46 189.9 293 80.9
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 2.5e-45 187.6 394 56.6
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.2e-44 185.3 354 62.7
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 5.8e-42 176.4 140 90.7
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.4e-40 171.8 290 80.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 2.4e-40 171.0 293 54.9
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.0e-38 165.6 480 54.4
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 1.8e-35 154.8 479 53.2
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.9e-29 134.8 282 45.7
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.9e-29 134.8 282 39.7
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 9.6e-29 132.5 508 27.6
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 5.3e-27 126.7 118 57.6
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 5.4e-24 116.7 92 79.3
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 6.7e-22 109.8 93 75.3
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 4.0e-19 100.5 353 56.9
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 2.0e-18 98.2 340 55.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 9.3e-16 89.4 326 56.1
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 4.6e-15 87.0 54 74.1
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 7.9e-15 86.3 323 53.9
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 8.7e-14 82.8 260 28.8
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 5.1e-06 57.0 298 22.1


User provided reference genes

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