Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 1.0e-193 679.9 331 100.0
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 4.1e-155 551.6 326 83.7
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.7e-148 529.6 331 79.8
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.7e-121 439.9 269 82.5
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 7.4e-112 407.9 333 61.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 4.8e-111 405.2 331 61.9
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.8e-110 403.3 329 60.5
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.8e-110 403.3 324 61.4
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 9.0e-110 401.0 325 62.5
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.0e-109 399.8 324 60.2
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.2e-108 396.4 331 59.5
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 3.8e-108 395.6 331 59.5
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 6.5e-108 394.8 335 58.5
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 9.3e-107 391.0 331 58.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 6.0e-106 388.3 332 58.4
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 6.0e-106 388.3 334 57.8
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 7.9e-106 387.9 331 60.4
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 1.0e-105 387.5 333 58.9
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 1.3e-105 387.1 331 60.1
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.8e-105 386.7 310 61.9
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 5.1e-105 385.2 344 57.3
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.9e-104 383.3 326 58.6
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.9e-104 383.3 329 59.0
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 5.7e-104 381.7 332 56.9
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.4e-102 377.1 332 57.2
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 3.1e-102 375.9 337 57.6
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 9.0e-102 374.4 315 61.3
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 9.0e-102 374.4 318 58.2
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 9.0e-102 374.4 330 57.9
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 2.6e-101 372.9 315 60.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 4.5e-101 372.1 319 58.6
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 7.6e-101 371.3 325 58.5
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.0e-100 370.9 314 58.9
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 1.7e-100 370.2 330 56.4
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.7e-100 370.2 333 56.8
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.8e-100 369.0 328 58.2
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 6.5e-100 368.2 215 79.1
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 1.4e-99 367.1 222 74.8
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.4e-99 367.1 315 57.1
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 5.5e-99 365.2 312 59.3
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 5.5e-99 365.2 328 56.1
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 3.5e-98 362.5 339 56.3
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 3.5e-98 362.5 321 58.6
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.6e-98 362.1 318 57.9
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.0e-97 360.9 306 59.8
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.3e-97 360.5 319 56.1
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 1.8e-97 360.1 326 55.8
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 1.8e-97 360.1 309 58.3
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 5.1e-97 358.6 307 57.3
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 8.7e-97 357.8 316 57.3
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.9e-96 356.7 233 70.8
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 4.3e-96 355.5 332 56.0
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 5.7e-96 355.1 317 56.8
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 7.4e-96 354.8 331 57.7
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 3.7e-95 352.4 233 70.4
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 8.2e-95 351.3 215 73.0
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.1e-94 350.9 216 72.2
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 1.4e-94 350.5 332 57.2
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 3.1e-94 349.4 222 71.6
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 3.1e-94 349.4 331 55.3
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 3.1e-94 349.4 285 58.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 6.9e-94 348.2 216 74.5
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 6.9e-94 348.2 231 69.3
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 5.9e-93 345.1 318 55.0
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 1.0e-92 344.4 216 71.3
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 5.0e-92 342.0 329 53.2
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 5.0e-92 342.0 317 54.6
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 7.2e-91 338.2 235 65.1
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.6e-90 337.0 222 69.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 7.9e-90 334.7 216 70.4
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 7.9e-90 334.7 331 53.2
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 3.0e-89 332.8 217 69.6
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 3.9e-89 332.4 216 69.0
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 5.1e-89 332.0 216 69.4
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 5.1e-89 332.0 290 57.6
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.5e-88 329.7 216 68.5
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 7.4e-88 328.2 317 53.9
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.2e-87 326.6 217 68.2
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 1.4e-86 323.9 317 52.7
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.8e-86 323.6 261 60.2
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 4.1e-86 322.4 217 67.3
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 6.9e-86 321.6 245 60.8
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 6.9e-86 321.6 245 60.8
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 6.9e-86 321.6 245 60.8
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 9.1e-86 321.2 216 66.7
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.5e-85 320.5 216 65.3
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 4.2e-83 312.4 217 64.5
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 1.5e-80 303.9 186 73.1
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 4.4e-80 302.4 267 56.2
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 9.7e-80 301.2 186 71.5
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 3.1e-78 296.2 193 72.0
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 4.1e-78 295.8 173 77.5
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 9.1e-78 294.7 187 74.3
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 5.9e-77 292.0 178 73.6
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 9.4e-75 284.6 175 73.1
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 9.4e-75 284.6 221 57.5
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 1.2e-74 284.3 184 70.7
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 3.6e-74 282.7 222 62.6
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 4.7e-74 282.3 316 47.8
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 1.8e-70 270.4 185 69.7
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 4.8e-63 245.7 164 73.2
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 2.7e-53 213.4 219 47.5
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.2e-50 204.5 205 51.7
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 1.2e-50 204.5 215 46.0
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 2.3e-49 200.3 150 64.7
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.0e-49 199.9 128 75.0
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.2e-49 199.1 128 75.0
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 5.2e-49 199.1 222 48.6
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 2.4e-46 190.3 222 43.2
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 2.0e-45 187.2 215 46.0
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 7.3e-43 178.7 138 59.4
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.5e-43 178.3 117 72.6
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 9.8e-40 168.3 205 46.3
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 3.0e-36 156.8 97 73.2
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 3.0e-36 156.8 97 73.2
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 8.1e-34 148.7 106 65.1
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 3.2e-30 136.7 106 65.1
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 6.0e-29 132.5 155 49.7
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 6.0e-29 132.5 155 49.7
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 2.6e-24 117.1 176 42.6
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.1e-21 107.5 79 62.0
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 5.1e-20 102.8 77 61.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.2e-16 91.7 125 46.4
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.6e-16 89.0 56 69.6
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 8.4e-15 85.5 110 47.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 2.1e-13 80.9 115 46.1
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 6.0e-13 79.3 105 46.7
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 7.8e-13 79.0 48 70.8
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 1.9e-11 74.3 92 44.6
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 3.8e-07 60.1 36 77.8
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 4.9e-07 59.7 48 52.1
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 2.4e-06 57.4 179 26.3


User provided reference genes

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