Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 2.4e-90 335.5 173 100.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 6.8e-85 317.4 173 94.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 5.8e-84 314.3 173 93.6
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 8.4e-83 310.5 173 93.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 7.6e-68 260.8 163 79.8
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.9e-66 256.1 166 78.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 5.4e-66 254.6 156 81.4
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 7.9e-65 250.8 164 77.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 5.1e-64 248.1 158 77.2
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 4.8e-62 241.5 157 74.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.1e-61 240.4 162 75.3
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.1e-61 240.4 162 75.3
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.8e-61 239.6 166 72.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.1e-61 238.8 163 69.9
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 4.0e-61 238.4 163 73.0
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 9.0e-61 237.3 165 73.3
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.2e-60 236.9 162 72.8
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-60 236.5 162 72.8
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.5e-60 236.5 155 75.5
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 2.0e-60 236.1 167 69.5
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.5e-60 235.0 166 71.7
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 4.5e-60 235.0 167 69.5
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 4.5e-60 235.0 153 75.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 5.8e-60 234.6 166 68.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.0e-59 233.8 160 75.6
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.0e-59 233.8 169 66.3
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 4.9e-59 231.5 165 69.7
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 8.4e-59 230.7 157 77.1
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 8.4e-59 230.7 162 72.2
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 8.4e-59 230.7 162 72.2
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.1e-58 230.3 160 74.4
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.1e-58 230.3 158 72.2
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-58 230.3 151 80.1
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.4e-58 229.9 164 67.7
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.4e-58 229.9 152 77.0
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.5e-58 229.2 165 70.9
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 2.5e-58 229.2 153 77.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.2e-58 228.8 157 73.9
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.2e-58 228.8 162 70.4
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 5.5e-58 228.0 162 67.9
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 5.5e-58 228.0 160 73.1
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 5.5e-58 228.0 169 71.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 7.1e-58 227.6 152 77.6
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 7.1e-58 227.6 169 72.2
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 9.3e-58 227.3 147 77.6
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.7e-57 225.7 191 63.4
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 3.5e-57 225.3 152 76.3
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.5e-57 225.3 152 78.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.0e-56 223.8 152 75.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-56 223.4 161 70.8
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.3e-56 222.6 165 69.7
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 5.1e-56 221.5 159 69.2
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.7e-56 221.1 172 66.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 8.7e-56 220.7 158 70.3
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.5e-55 219.9 160 66.9
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.5e-55 219.2 161 70.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 3.3e-55 218.8 152 72.4
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.3e-55 218.8 161 70.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 4.3e-55 218.4 166 66.9
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 5.7e-55 218.0 162 67.9
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 7.4e-55 217.6 161 69.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.1e-54 216.1 153 70.6
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 2.8e-54 215.7 153 70.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 3.7e-54 215.3 160 69.4
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 6.2e-54 214.5 156 67.3
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 8.2e-54 214.2 161 70.8
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.1e-53 213.8 154 70.1
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.4e-53 213.4 161 68.9
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.4e-53 213.4 156 66.0
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.4e-53 213.4 150 72.0
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.8e-53 213.0 144 74.3
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 2.4e-53 212.6 147 71.4
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 4.1e-53 211.8 144 72.2
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.3e-53 211.5 161 67.7
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.9e-53 211.1 154 69.5
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 9.0e-53 210.7 161 67.7
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.5e-52 209.9 154 69.5
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 4.5e-52 208.4 164 67.1
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.0e-51 207.2 185 60.5
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.0e-51 207.2 146 71.2
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.9e-51 205.7 162 68.5
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 2.9e-51 205.7 141 70.9
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.8e-51 205.3 162 67.9
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.8e-51 205.3 162 67.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 5.0e-51 204.9 162 67.9
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.0e-51 204.9 162 67.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 6.5e-51 204.5 131 80.9
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-50 203.8 169 63.9
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 4.2e-50 201.8 156 67.3
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.7e-49 199.1 132 75.0
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.5e-49 198.7 138 72.5
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 6.1e-49 198.0 124 79.0
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.0e-48 197.2 153 66.0
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 6.7e-48 194.5 159 65.4
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 6.7e-48 194.5 159 65.4
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.7e-48 194.1 138 71.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 1.5e-47 193.4 159 65.4
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.9e-47 193.0 137 70.8
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 5.7e-47 191.4 121 80.2
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 7.4e-47 191.0 138 68.8
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.4e-45 186.8 158 61.4
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 3.1e-45 185.7 162 60.5
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 9.0e-45 184.1 137 66.4
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.0e-44 183.0 161 59.0
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 1.7e-43 179.9 157 58.6
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.2e-41 173.7 102 83.3
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.2e-41 173.7 112 80.4
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.6e-41 172.2 128 71.1
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 6.1e-41 171.4 103 80.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 7.9e-41 171.0 128 71.1
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.0e-40 170.6 105 83.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 6.7e-40 167.9 108 73.1
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 9.7e-39 164.1 101 81.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 8.2e-38 161.0 110 75.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.4e-37 160.2 119 67.2
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.4e-34 150.2 101 76.2
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 3.2e-34 149.1 105 70.5
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.6e-33 145.6 110 69.1
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.0e-32 142.5 117 62.4
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 8.8e-32 141.0 100 68.0
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.1e-31 140.6 148 48.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.5e-31 140.2 122 59.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.1e-29 134.0 84 76.2
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 7.7e-28 127.9 81 75.3
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 6.5e-27 124.8 96 70.8
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.8e-21 106.7 154 41.6
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.6e-20 102.8 129 43.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.2e-19 99.8 137 48.9
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 3.8e-19 99.0 130 44.6
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 4.2e-18 95.5 114 47.4
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.4e-16 90.5 60 75.0
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 5.2e-16 88.6 56 76.8
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 8.8e-16 87.8 54 77.8
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.6e-09 67.0 47 68.1
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 6.1e-09 65.1 48 64.6
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 6.1e-09 65.1 48 64.6
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.2e-07 60.8 47 61.7


User provided reference genes

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