Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 0.0e+00 1133.6 584 100.0
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.7e-151 540.4 419 72.3
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.1e-149 533.5 350 80.9
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.4e-144 516.2 350 78.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 8.1e-130 468.4 350 68.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.1e-129 468.0 350 68.6
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.1e-129 466.5 349 68.2
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.9e-129 465.3 350 68.3
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-128 463.4 357 66.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.6e-128 463.4 350 68.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.3e-127 461.1 382 64.4
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.9e-127 459.1 350 67.4
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 6.4e-127 458.8 358 66.8
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.1e-125 453.8 354 66.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.1e-124 449.1 358 65.1
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.5e-123 446.8 349 67.0
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.6e-123 445.7 352 65.9
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 7.3e-123 445.3 391 61.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.6e-123 444.9 353 64.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.3e-122 444.5 354 66.1
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.2e-122 442.2 350 64.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-121 440.7 354 63.8
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.8e-121 440.7 354 63.8
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.1e-121 439.9 354 63.8
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 9.0e-121 438.3 354 63.6
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 9.0e-121 438.3 365 63.8
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-120 438.0 354 63.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.2e-120 438.0 358 63.7
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.5e-120 437.6 350 64.0
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.0e-120 437.2 367 63.2
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.6e-120 436.8 350 65.7
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.6e-120 436.8 350 63.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.4e-120 436.4 354 63.6
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 5.8e-120 435.6 361 64.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 7.6e-120 435.3 348 64.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.9e-120 434.9 350 65.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.2e-119 433.7 352 65.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.2e-119 433.7 348 62.6
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 4.9e-119 432.6 351 63.5
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.9e-119 432.6 354 62.7
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.4e-118 430.3 350 62.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.4e-118 429.1 359 64.3
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.2e-117 427.9 350 65.4
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.6e-117 427.6 346 63.9
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.7e-117 426.8 362 63.0
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.7e-117 426.8 354 62.7
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.5e-117 426.4 359 63.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 4.6e-117 426.0 348 62.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 6.0e-117 425.6 351 64.1
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 7.9e-117 425.2 348 61.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 7.9e-117 425.2 346 62.7
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.0e-116 424.9 347 64.3
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.0e-116 423.3 350 64.6
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.0e-116 423.3 353 63.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 6.7e-116 422.2 348 61.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.5e-115 421.0 348 63.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 4.3e-115 419.5 350 60.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 5.6e-115 419.1 353 62.9
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 7.4e-115 418.7 355 62.0
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.6e-115 418.3 375 60.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.3e-114 417.9 351 62.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.1e-114 417.2 361 61.5
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 2.8e-114 416.8 345 63.5
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.7e-114 416.4 262 76.7
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 4.8e-114 416.0 352 62.8
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 8.1e-114 415.2 353 62.3
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.1e-113 414.8 374 60.7
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.4e-113 414.5 357 60.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 2.4e-113 413.7 369 59.3
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 3.1e-113 413.3 345 61.4
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.0e-113 412.9 361 61.5
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 5.3e-113 412.5 340 61.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.2e-112 411.4 351 61.0
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-112 411.4 356 61.2
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.2e-112 411.4 369 59.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.0e-111 408.3 347 63.4
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.8e-111 406.4 364 59.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.4e-110 404.4 361 60.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.4e-110 404.4 353 60.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.4e-110 404.4 356 60.1
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.5e-110 403.7 361 59.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.2e-110 403.3 354 60.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.2e-110 402.9 345 60.6
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 4.2e-110 402.9 349 60.2
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 4.2e-110 402.9 347 60.5
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.1e-110 402.1 345 60.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 7.1e-110 402.1 264 74.2
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 9.3e-110 401.7 350 60.6
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.2e-109 401.4 353 60.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.2e-109 401.4 358 61.5
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.7e-109 400.2 354 59.9
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.5e-109 399.8 359 59.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 3.5e-109 399.8 354 60.5
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.0e-108 398.3 354 59.3
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.8e-108 397.5 320 63.1
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 2.3e-108 397.1 349 59.0
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.3e-108 397.1 354 59.3
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.3e-108 397.1 394 54.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 3.0e-108 396.7 354 59.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.0e-108 396.7 347 60.2
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.9e-108 396.4 354 59.3
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.7e-108 395.2 356 57.9
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.7e-108 395.2 351 60.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.1e-107 394.8 355 59.2
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.9e-107 394.0 358 59.8
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-106 391.0 352 59.9
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.8e-106 390.2 354 58.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.8e-106 389.4 351 60.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 6.2e-106 389.0 359 57.9
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.1e-105 388.3 353 59.8
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.4e-105 387.9 336 60.1
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.4e-105 387.9 355 58.0
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 5.3e-105 386.0 314 62.4
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.6e-104 383.6 323 62.5
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.4e-102 377.9 367 56.7
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.4e-102 377.9 351 58.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 9.3e-102 375.2 363 57.6
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-100 370.5 347 56.8
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.3e-100 370.5 356 55.9
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.3e-98 364.8 363 55.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.6e-98 364.4 316 60.1
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.1e-97 361.7 348 57.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 4.5e-96 356.3 354 54.2
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 7.7e-96 355.5 354 55.1
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.2e-95 354.0 348 55.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.6e-93 346.7 338 55.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 6.7e-92 342.4 357 53.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.2e-90 337.4 273 63.7
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.2e-86 322.4 230 70.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 2.1e-85 320.9 328 52.4
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 7.0e-81 305.8 271 57.9
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 7.2e-78 295.8 342 46.8
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.3e-76 290.8 266 56.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 3.0e-76 290.4 332 46.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.0e-76 290.4 337 51.9
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.8e-74 283.1 203 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 4.1e-73 280.0 382 46.3
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 5.3e-73 279.6 322 49.7
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.2e-72 278.5 230 61.7
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-71 275.0 344 44.2
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.0e-71 273.1 338 45.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.2e-70 270.0 344 43.9
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 8.0e-69 265.8 326 44.5
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.0e-68 265.4 344 43.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.0e-68 263.8 195 68.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.5e-63 246.1 354 45.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-61 240.4 214 59.3
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.2e-59 235.3 149 75.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.7e-59 233.0 296 44.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.3e-58 231.9 210 56.7
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.3e-58 229.2 188 61.7
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.6e-56 224.9 183 63.9
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 5.9e-56 223.0 148 70.9
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.0e-47 195.7 152 68.4
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.1e-46 192.2 313 39.3
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.6e-37 161.8 342 31.9
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.8e-28 131.7 260 31.9
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.7e-26 124.0 214 37.9
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 2.4e-25 121.3 332 27.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 4.6e-24 117.1 157 46.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.6e-23 113.2 83 69.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.3e-22 110.5 123 48.0
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 6.2e-21 106.7 294 27.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.4e-20 105.5 123 44.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.9e-17 95.1 268 32.1
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.0e-11 75.1 184 37.0


User provided reference genes

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