Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 4.1e-116 421.4 212 100.0
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.2e-102 376.7 214 88.8
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 6.0e-99 364.4 214 86.4
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 5.1e-90 334.7 214 79.4
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 1.5e-86 323.2 211 79.1
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 4.6e-83 311.6 216 74.5
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 2.5e-81 305.8 216 73.1
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 5.6e-81 304.7 216 72.7
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 9.6e-81 303.9 216 72.7
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.3e-80 303.5 216 73.1
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.8e-80 302.4 218 72.0
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.8e-80 302.4 217 73.3
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 3.1e-79 298.9 217 72.4
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 5.3e-79 298.1 219 71.7
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 2.0e-78 296.2 217 70.5
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 9.9e-78 293.9 217 71.9
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 9.9e-78 293.9 219 72.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 9.9e-78 293.9 215 70.2
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 1.3e-77 293.5 219 71.7
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 2.9e-77 292.4 219 71.7
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.9e-77 291.6 214 70.6
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 6.4e-77 291.2 217 72.8
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 8.4e-77 290.8 221 68.8
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 1.4e-76 290.0 218 70.6
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.9e-76 289.7 215 72.6
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 2.4e-76 289.3 219 68.9
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 3.2e-76 288.9 217 70.0
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 4.2e-76 288.5 218 67.0
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 4.2e-76 288.5 227 68.7
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 9.3e-76 287.3 217 69.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.3e-76 287.3 217 69.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.3e-76 287.3 217 69.6
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.2e-75 287.0 217 69.6
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.6e-75 286.6 217 71.0
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.5e-75 285.4 217 69.1
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.5e-75 285.4 217 66.4
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 4.6e-75 285.0 217 67.7
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 6.0e-75 284.6 217 68.7
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.0e-74 283.9 215 70.2
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.0e-74 283.9 217 71.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.0e-74 283.9 214 69.6
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 1.3e-74 283.5 215 69.3
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.9e-73 279.6 216 68.5
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 3.3e-73 278.9 216 67.6
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 4.3e-73 278.5 217 68.2
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 9.6e-73 277.3 227 66.1
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 9.6e-73 277.3 217 65.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.3e-72 276.9 217 68.7
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 1.6e-72 276.6 217 65.0
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 4.8e-72 275.0 217 68.2
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 6.2e-72 274.6 219 68.0
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 8.1e-72 274.2 217 66.8
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.1e-72 274.2 186 72.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 4.0e-71 271.9 217 64.5
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 4.0e-71 271.9 222 65.3
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 5.3e-71 271.6 217 64.5
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.6e-70 269.2 176 75.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.6e-70 269.2 214 66.8
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 2.6e-70 269.2 230 62.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.4e-70 268.9 174 74.1
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 4.5e-70 268.5 220 63.6
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.5e-70 268.5 173 76.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 7.6e-70 267.7 167 78.4
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.0e-69 267.3 216 66.7
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 4.9e-69 265.0 225 63.6
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.9e-69 265.0 188 70.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.9e-68 263.1 217 64.1
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 5.5e-68 261.5 210 66.7
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 7.1e-68 261.2 167 75.4
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.2e-67 260.4 167 77.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.6e-67 260.0 214 63.6
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 2.1e-67 259.6 184 70.1
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.5e-67 258.8 218 63.3
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.0e-66 257.3 218 63.3
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 1.0e-66 257.3 220 61.4
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.3e-66 256.9 216 63.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-66 256.9 220 61.8
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.8e-66 256.5 167 75.4
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 3.0e-66 255.8 217 61.8
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 3.9e-66 255.4 166 75.9
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 5.1e-66 255.0 163 75.5
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 8.7e-66 254.2 217 61.8
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 7.4e-65 251.1 170 74.7
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 9.6e-65 250.8 218 61.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 9.6e-65 250.8 174 70.7
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 9.6e-65 250.8 211 62.6
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-64 250.4 163 73.0
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.6e-64 250.0 177 72.3
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 2.1e-64 249.6 219 62.1
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 2.8e-64 249.2 193 67.4
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.8e-64 249.2 225 59.1
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.8e-64 249.2 172 72.7
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 3.7e-64 248.8 221 60.2
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 4.8e-64 248.4 218 61.9
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 8.2e-64 247.7 217 59.4
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 8.2e-64 247.7 224 58.5
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 8.2e-64 247.7 218 60.6
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.4e-63 246.9 218 61.0
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.8e-63 246.5 217 61.8
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 2.4e-63 246.1 164 73.8
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 5.3e-63 245.0 219 58.9
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 9.0e-63 244.2 220 58.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-62 243.8 218 61.0
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.2e-62 243.8 217 59.0
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.2e-62 243.8 217 59.0
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 3.4e-62 242.3 222 59.0
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 4.5e-62 241.9 222 59.0
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 5.8e-62 241.5 219 57.1
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.8e-61 238.8 168 72.6
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.5e-60 236.1 175 66.9
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 2.5e-60 236.1 143 79.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 6.7e-58 228.0 224 56.2
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.1e-57 227.3 203 64.5
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 8.2e-56 221.1 202 56.9
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.0e-54 216.5 175 62.9
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.7e-48 195.7 180 60.6
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.0e-42 177.6 99 80.8
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 8.8e-42 174.5 135 58.5
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 5.7e-41 171.8 167 47.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.3e-40 170.6 95 81.1
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 8.2e-40 167.9 168 48.2
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 4.1e-39 165.6 95 76.8
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.3e-39 165.2 171 50.9
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 1.7e-37 160.2 197 42.6
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.4e-33 145.6 86 72.1
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 9.1e-31 137.9 141 52.5
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.1e-27 126.7 161 37.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.5e-22 109.0 150 40.7
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.8e-18 97.1 113 56.6
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 5.4e-15 85.5 132 32.6
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.5e-12 77.4 43 74.4
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.6e-11 73.9 155 33.5
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 3.6e-11 72.8 100 47.0


User provided reference genes

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