Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.1e-161 573.2 282 100.0
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.2e-104 382.9 382 58.1
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 8.2e-104 380.9 382 57.1
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.4e-95 353.6 321 61.1
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.3e-88 328.2 380 48.9
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 5.4e-87 325.1 376 48.9
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 4.5e-86 322.0 344 51.2
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.9e-85 319.3 379 48.0
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 5.0e-85 318.5 385 49.1
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.5e-84 316.2 379 48.8
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.7e-83 312.8 373 48.5
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 8.0e-83 311.2 390 46.9
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.0e-82 310.8 390 46.2
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.0e-82 310.8 373 48.8
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.7e-81 305.1 385 48.1
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 9.8e-81 304.3 404 46.5
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 1.7e-80 303.5 341 49.3
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.2e-80 303.1 406 44.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 4.9e-80 302.0 349 49.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.8e-79 300.1 376 46.3
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.8e-79 300.1 358 47.5
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.4e-79 299.7 374 47.3
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 3.1e-79 299.3 389 45.2
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 9.1e-79 297.7 376 46.5
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.6e-78 297.0 348 49.4
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.5e-76 290.4 386 43.8
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.3e-76 289.3 352 46.0
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 9.5e-76 287.7 362 45.6
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 2.1e-75 286.6 353 45.9
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.8e-75 286.2 360 46.1
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 8.0e-75 284.6 386 44.0
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 8.0e-75 284.6 279 54.5
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.8e-74 283.5 391 44.8
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.8e-74 283.5 342 47.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 5.2e-74 282.0 355 44.5
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 6.8e-74 281.6 366 45.1
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 6.8e-74 281.6 347 47.8
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 6.8e-74 281.6 359 46.0
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.5e-73 280.4 347 46.4
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 5.7e-73 278.5 360 44.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 5.7e-73 278.5 349 45.0
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 9.8e-73 277.7 363 44.9
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.3e-72 277.3 369 43.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.7e-72 276.9 369 44.2
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 2.2e-72 276.6 366 44.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 2.9e-72 276.2 354 45.5
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.8e-71 273.5 381 42.8
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.8e-71 273.5 365 45.5
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 4.1e-71 272.3 352 45.7
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 4.1e-71 272.3 375 44.5
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.1e-71 272.3 361 44.9
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.1e-71 272.3 366 43.4
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 4.1e-71 272.3 380 43.9
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 5.4e-71 271.9 345 44.6
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 5.4e-71 271.9 375 43.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 9.2e-71 271.2 362 44.2
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 1.6e-70 270.4 383 42.8
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.6e-70 270.4 357 43.4
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.5e-70 269.2 343 45.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 4.6e-70 268.9 375 44.3
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 5.9e-70 268.5 362 43.1
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.0e-69 267.7 383 42.6
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.3e-69 267.3 361 42.9
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.3e-69 267.3 354 43.2
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 2.3e-69 266.5 361 42.9
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.3e-69 266.5 346 44.8
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.3e-69 266.5 382 42.7
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 2.9e-69 266.2 354 43.8
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.9e-69 266.2 345 48.4
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 5.0e-69 265.4 353 43.6
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.0e-69 265.4 380 42.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 6.6e-69 265.0 385 41.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 8.6e-69 264.6 346 43.6
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.5e-68 263.8 360 43.3
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.5e-68 263.8 362 43.1
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.5e-68 263.8 362 43.1
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 1.5e-68 263.8 353 43.6
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 1.5e-68 263.8 351 44.4
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.9e-68 263.5 338 46.2
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.9e-68 263.5 346 46.8
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.9e-68 263.5 367 42.5
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.5e-68 263.1 361 41.6
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.5e-68 263.1 361 43.5
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-68 263.1 408 40.9
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 2.5e-68 263.1 346 43.4
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 5.6e-68 261.9 364 43.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 7.3e-68 261.5 378 41.5
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 7.3e-68 261.5 377 43.8
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 1.2e-67 260.8 365 43.3
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.8e-67 259.6 381 42.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.7e-67 258.8 346 44.2
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.7e-67 258.8 359 44.0
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.2e-67 258.5 349 42.7
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.0e-67 258.1 359 42.6
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.4e-66 257.3 341 44.0
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 2.3e-66 256.5 352 43.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 2.3e-66 256.5 327 45.9
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 4.0e-66 255.8 367 42.0
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 4.0e-66 255.8 359 42.9
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 4.0e-66 255.8 380 40.3
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 4.0e-66 255.8 382 40.3
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 5.2e-66 255.4 360 42.8
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 6.8e-66 255.0 244 54.9
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.2e-65 254.2 375 41.6
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 4.4e-65 252.3 345 42.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.4e-65 252.3 529 34.0
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.5e-65 251.5 386 41.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.9e-64 249.6 329 42.9
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.3e-64 248.1 369 41.2
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-63 246.9 406 38.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.9e-63 246.9 422 37.7
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 2.4e-63 246.5 543 32.8
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.1e-63 245.7 359 41.8
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 9.2e-63 244.6 354 41.0
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.2e-62 244.2 275 50.2
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.7e-62 243.0 324 42.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 4.6e-62 242.3 337 42.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.8e-62 241.5 302 47.4
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.3e-61 240.7 332 43.4
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.7e-61 240.4 319 44.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 2.3e-61 240.0 414 37.7
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.1e-58 231.1 228 53.1
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 5.8e-57 225.3 373 38.3
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.8e-57 224.6 371 39.6
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.7e-56 223.8 375 39.2
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-56 223.0 259 48.3
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.4e-55 220.7 222 52.7
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.6e-54 217.2 239 51.9
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 6.0e-54 215.3 340 40.0
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.9e-52 210.3 284 45.4
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.1e-51 206.8 238 47.5
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.6e-51 206.1 480 32.7
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.6e-49 199.9 335 37.9
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.3e-48 197.6 212 52.4
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.1e-47 194.5 217 49.3
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.4e-47 194.1 333 38.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 4.6e-46 189.1 341 36.4
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.5e-44 184.1 218 47.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 4.3e-44 182.6 371 32.3
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 2.2e-40 170.2 226 44.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 3.8e-40 169.5 204 48.0
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 7.1e-39 165.2 356 31.7
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.1e-28 131.3 141 47.5
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.5e-25 120.9 93 63.4
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.6e-22 110.9 74 71.6
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.8e-21 107.5 105 53.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 6.7e-21 105.5 81 63.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 2.5e-20 103.6 250 30.0
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.6e-20 101.7 166 39.8
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.0e-13 81.6 48 79.2
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 8.7e-13 78.6 125 40.0
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.7e-12 75.9 43 79.1
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 6.3e-11 72.4 193 27.5
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.4e-10 71.2 146 35.6
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 6.9e-10 68.9 225 23.6
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 4.5e-09 66.2 35 77.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.2e-06 58.2 32 71.9
SEGI_35437 Sequoiadendron giganteum HOM05D004534 ORTHO05D005413 2.7e-06 57.0 44 56.8


User provided reference genes

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