Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 0.0e+00 2788.1 1420 100.0
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 6.1e-171 606.3 1437 35.4
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 6.7e-170 602.8 1388 35.4
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.2e-165 587.8 1349 35.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.4e-162 578.6 1418 34.0
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.5e-161 575.1 1470 34.8
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.1e-148 532.3 1409 33.5
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 3.8e-141 507.3 1366 33.0
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.5e-137 495.4 1350 33.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 2.6e-137 494.6 1253 34.5
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.5e-134 484.2 1350 31.8
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 4.5e-134 483.8 1489 31.2
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.7e-133 481.9 1348 32.0
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.5e-133 479.9 1431 32.6
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 6.5e-133 479.9 1487 30.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-132 478.8 1431 32.6
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.5e-132 478.8 1398 32.2
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.6e-131 475.3 1436 31.2
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 2.6e-129 468.0 1363 32.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.2e-128 464.9 1429 32.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.8e-127 461.8 1427 30.6
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.4e-127 460.3 1370 31.2
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 9.2e-127 459.5 1423 31.4
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.9e-126 456.8 1357 32.6
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 3.3e-124 451.1 1508 31.4
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 7.3e-124 449.9 1429 30.9
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.4e-122 445.7 1320 31.1
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 2.9e-120 438.0 1508 30.6
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.2e-119 434.5 1495 31.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 5.4e-119 433.7 1333 32.2
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.7e-117 428.7 1443 31.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.1e-116 426.0 1390 30.4
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.0e-114 417.5 1352 31.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 4.9e-112 410.6 1398 30.0
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 5.4e-111 407.1 1431 29.0
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.7e-110 404.8 1426 28.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.7e-110 404.8 1417 29.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.6e-110 404.1 1430 29.2
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 7.8e-110 403.3 1420 29.9
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 5.0e-109 400.6 1422 30.6
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.3e-108 397.9 1376 29.6
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 3.3e-108 397.9 1323 30.8
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.3e-108 397.9 1466 29.4
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.6e-107 394.4 1428 29.7
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.4e-106 392.5 1434 29.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.2e-105 389.4 1429 29.9
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 2.6e-105 388.3 1426 30.1
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 4.4e-105 387.5 1384 30.0
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.7e-104 385.6 1272 31.8
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 6.6e-101 373.6 1302 31.0
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.4e-98 365.9 1079 32.8
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.0e-97 362.1 1450 28.0
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 5.4e-95 354.0 1448 30.3
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.2e-94 352.8 807 35.4
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.7e-94 351.7 1326 29.3
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 7.6e-89 333.6 1346 28.1
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.3e-83 316.2 391 47.1
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 4.8e-83 314.3 1386 28.2
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.2e-80 305.4 1318 28.6
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 7.1e-79 300.4 1499 27.6
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.1e-78 298.9 1442 28.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 3.7e-75 288.1 749 33.8
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.4e-74 285.4 1423 27.1
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 4.5e-73 281.2 1446 27.9
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 4.9e-72 277.7 1440 26.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 6.4e-72 277.3 1383 26.2
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 3.5e-70 271.6 1399 27.6
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 5.5e-63 247.7 1420 25.8
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.7e-62 245.4 1353 25.2
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.0e-61 243.4 1357 25.5
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.4e-58 233.0 1387 26.5
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 4.2e-55 221.5 1195 27.8
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 1.5e-52 213.0 296 45.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.1e-50 206.8 864 28.1
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.4e-50 205.7 1203 26.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 5.3e-50 204.5 578 32.9
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.0e-49 202.6 1250 26.2
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 3.0e-45 188.7 1000 27.0
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.4e-39 167.2 1415 24.8
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 2.3e-37 162.5 948 26.1
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.7e-37 161.0 1102 26.0
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.7e-36 157.9 1405 24.8
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.8e-35 155.6 893 26.3
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.0e-28 132.9 1319 23.1
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.3e-27 130.2 781 27.5
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 3.7e-27 128.6 1223 23.7
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 6.3e-27 127.9 933 26.2
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 3.1e-26 125.6 1394 23.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.0e-25 122.9 1321 24.2
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 4.2e-23 115.2 1142 23.5
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 2.0e-17 96.3 566 26.5
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.9e-16 92.4 742 25.1
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 7.2e-15 87.8 1186 23.3
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 9.8e-12 77.4 381 29.1
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 9.8e-12 77.4 510 24.9
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 9.8e-12 77.4 557 25.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 2.2e-11 76.3 486 24.9
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 3.7e-11 75.5 1020 23.2
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 8.3e-11 74.3 510 25.7
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.1e-10 72.0 903 23.4
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 3.8e-08 65.5 266 27.4
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.1e-07 63.9 503 24.7
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.9e-07 63.2 137 34.3
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.1e-06 59.7 759 26.1


User provided reference genes

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