Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020240 Citrullus lanatus HOM05D001525 ORTHO05D001397 3.4e-33 144.4 73 100.0
MELO3C025477.2 Cucumis melo HOM05D001525 ORTHO05D001397 4.0e-18 94.4 50 96.0
MELO3C033764.2 Cucumis melo HOM05D001525 ORTHO05D001397 4.0e-18 94.4 50 96.0
CsaV3_5G026200 Cucumis sativus L. HOM05D001525 ORTHO05D001397 8.9e-18 93.2 50 94.0
Sed0019196 Sechium edule HOM05D001525 ORTHO05D001397 1.4e-15 85.9 50 86.0
Sed0008434 Sechium edule HOM05D001525 ORTHO05D001397 5.9e-14 80.5 51 76.5
Gohir.D06G173400 Gossypium hirsutum HOM05D001525 ORTHO05D001397 2.5e-12 75.1 47 80.9
Gorai.010G202600 Gossypium raimondii HOM05D001525 ORTHO05D001397 2.5e-12 75.1 47 80.9
COL.COLO4_10918 Corchorus olitorius HOM05D001525 ORTHO05D001397 5.6e-12 73.9 47 85.1
Gohir.A06G177400 Gossypium hirsutum HOM05D001525 ORTHO05D001397 5.6e-12 73.9 47 78.7
Lj1g0004403 Lotus japonicus HOM05D001525 ORTHO05D001397 7.3e-12 73.6 45 82.2
CiPaw.01G281800 Carya illinoinensis HOM05D001525 ORTHO05D001397 1.2e-11 72.8 44 84.1
Duzib128G1221 Durio zibethinus HOM05D001525 ORTHO05D001397 1.2e-11 72.8 44 84.1
QL08p057905 Quercus lobata HOM05D001525 ORTHO05D001397 1.6e-11 72.4 44 84.1
Thecc.10G058000 Theobroma cacao HOM05D001525 ORTHO05D001397 1.6e-11 72.4 47 83.0
Thecc.10G058300 Theobroma cacao HOM05D001525 ORTHO05D001397 2.1e-11 72.0 44 84.1
Actinidia25065 Actinidia chinensis HOM05D001525 ORTHO05D001397 4.7e-11 70.9 50 74.0
Actinidia34343 Actinidia chinensis HOM05D001525 ORTHO05D001397 4.7e-11 70.9 50 74.0
Actinidia02983 Actinidia chinensis HOM05D001525 ORTHO05D001397 6.1e-11 70.5 47 74.5
Glyma.18G285700 Glycine max HOM05D001525 ORTHO05D001397 6.1e-11 70.5 50 72.0
Prupe.2G227200 Prunus persica HOM05D001525 ORTHO05D001397 6.1e-11 70.5 46 78.3
RcHm_v2.0_Chr1g0365441 Rosa chinensis HOM05D001525 ORTHO05D001397 6.1e-11 70.5 44 81.8
Hund19999 Selenicereus undatus HOM05D001525 ORTHO05D001397 6.1e-11 70.5 49 73.5
VMungo1383G1982 Vigna mungo HOM05D001525 ORTHO05D001397 6.1e-11 70.5 45 77.8
Glyma.02G095700 Glycine max HOM05D001525 ORTHO05D001397 8.0e-11 70.1 45 77.8
Phvul.008G015900 Phaseolus vulgaris HOM05D001525 ORTHO05D001397 8.0e-11 70.1 45 77.8
Atru.chr12.565 Acer truncatum HOM05D001525 ORTHO05D001397 1.0e-10 69.7 48 79.2
arahy.Tifrunner.gnm1.ann1.W1RV07 Arachis hypogaea HOM05D001525 ORTHO05D001397 1.0e-10 69.7 53 71.7
arahy.Tifrunner.gnm1.ann1.Y9KA2N Arachis hypogaea HOM05D001525 ORTHO05D001397 1.0e-10 69.7 53 71.7
Medtr7g022840 Medicago truncatula HOM05D001525 ORTHO05D001397 1.4e-10 69.3 50 70.0
vmacro07141 Vaccinium macrocarpon HOM05D001525 ORTHO05D001397 1.4e-10 69.3 58 65.5
Cpa.g.sc1.330 Carica papaya HOM05D001525 ORTHO05D001397 1.8e-10 68.9 44 79.5
Sabra10G0163500 Salix brachista HOM05D001525 ORTHO05D001397 3.1e-10 68.2 44 79.5
TPR.G15516 Trifolium pratense HOM05D001525 ORTHO05D001397 3.1e-10 68.2 50 68.0
FAN10G1638 Fragaria x ananassa HOM05D001525 ORTHO05D001397 4.0e-10 67.8 44 77.3
Manes.07G110100 Manihot esculenta HOM05D001525 ORTHO05D001397 4.0e-10 67.8 43 81.4
Rhsim03G0128400 Rhododendron simsii HOM05D001525 ORTHO05D001397 4.0e-10 67.8 44 77.3
Ciclev10033177m.g Citrus clementina HOM05D001525 ORTHO05D001397 5.2e-10 67.4 43 79.1
MD01G1120400 Malus domestica HOM05D001525 ORTHO05D001397 5.2e-10 67.4 46 73.9
FvH4_7g21050 Fragaria vesca HOM05D001525 ORTHO05D001397 6.8e-10 67.0 44 77.3
FAN01G0344 Fragaria x ananassa HOM05D001525 ORTHO05D001397 6.8e-10 67.0 44 77.3
FAN06G3112 Fragaria x ananassa HOM05D001525 ORTHO05D001397 6.8e-10 67.0 44 77.3
FAN06G3158 Fragaria x ananassa HOM05D001525 ORTHO05D001397 6.8e-10 67.0 44 77.3
Sopen04g005470 Solanum pennellii HOM05D001525 ORTHO05D001397 6.8e-10 67.0 50 68.0
MD07G1189600 Malus domestica HOM05D001525 ORTHO05D001397 8.9e-10 66.6 46 71.7
Hma1.2p1_1483F.1_g286290 Hydrangea macrophylla HOM05D001525 ORTHO05D001397 1.2e-09 66.2 44 75.0
Lalb_Chr17g0336301 Lupinus albus HOM05D001525 ORTHO05D001397 1.2e-09 66.2 50 68.0
FAN03G2704 Fragaria x ananassa HOM05D001525 ORTHO05D001397 2.0e-09 65.5 44 75.0
Manes.10G037300 Manihot esculenta HOM05D001525 ORTHO05D001397 2.0e-09 65.5 44 75.0
Sc20g0002440 Simmondsia chinensis HOM05D001525 ORTHO05D001397 2.0e-09 65.5 42 73.8
Haze_16992 Corylus avellana HOM05D001525 ORTHO05D001397 2.6e-09 65.1 47 74.5
Eucgr.G02763 Eucalyptus grandis HOM05D001525 ORTHO05D001397 2.6e-09 65.1 42 78.6
TWI38G0359 Tripterygium wilfordii HOM05D001525 ORTHO05D001397 2.6e-09 65.1 39 82.1
TWI15G0169 Tripterygium wilfordii HOM05D001525 ORTHO05D001397 3.4e-09 64.7 39 82.1
Haze_16991 Corylus avellana HOM05D001525 ORTHO05D001397 4.4e-09 64.3 46 76.1
DCAR_027679 Daucus carota HOM05D001525 ORTHO05D001397 4.4e-09 64.3 41 75.6
Potri.010G211500 Populus trichocarpa HOM05D001525 ORTHO05D001397 4.4e-09 64.3 46 69.6
Eucgr.G02891 Eucalyptus grandis HOM05D001525 ORTHO05D001397 5.8e-09 63.9 42 76.2
Hund22416 Selenicereus undatus HOM05D001525 ORTHO05D001397 5.8e-09 63.9 47 72.3
THA.LOC104806077 Tarenaya hassleriana HOM05D001525 ORTHO05D001397 5.8e-09 63.9 44 72.7
THA.LOC104810007 Tarenaya hassleriana HOM05D001525 ORTHO05D001397 5.8e-09 63.9 44 72.7
EL10Ac2g03461 Beta vulgaris HOM05D001525 ORTHO05D001397 7.5e-09 63.5 44 70.5
Nitab4.5_0000914g0300 Nicotiana tabacum HOM05D001525 ORTHO05D001397 9.8e-09 63.2 42 78.6
Prupe.2G227300 Prunus persica HOM05D001525 ORTHO05D001397 9.8e-09 63.2 50 68.0
Cfa001542 Carpinus fangiana HOM05D001525 ORTHO05D001397 1.7e-08 62.4 46 76.1
QL08p057925 Quercus lobata HOM05D001525 ORTHO05D001397 2.9e-08 61.6 46 73.9
AL5G36360 Arabidopsis lyrata HOM05D001525 ORTHO05D001397 3.7e-08 61.2 44 68.2
AT3G55240 Arabidopsis thaliana HOM05D001525 ORTHO05D001397 3.7e-08 61.2 44 68.2
BcaB01g00120 Brassica carinata HOM05D001525 ORTHO05D001397 3.7e-08 61.2 44 68.2
Thhalv10010856m.g Eutrema salsugineum HOM05D001525 ORTHO05D001397 3.7e-08 61.2 44 68.2
Glyma.10G291000 Glycine max HOM05D001525 ORTHO05D001397 4.9e-08 60.8 48 68.8
CARHR165240 Cardamine hirsuta HOM05D001525 ORTHO05D001397 6.4e-08 60.5 44 65.9
GSVIVG01005963001 Vitis vinifera HOM05D001525 ORTHO05D001397 6.4e-08 60.5 47 68.1
A04p04710 Brassica napus HOM05D001525 ORTHO05D001397 8.3e-08 60.1 44 65.9
C04p37030 Brassica napus HOM05D001525 ORTHO05D001397 8.3e-08 60.1 44 65.9
BraA04t16183Z Brassica rapa HOM05D001525 ORTHO05D001397 8.3e-08 60.1 44 65.9
Glyma.20G240100 Glycine max HOM05D001525 ORTHO05D001397 8.3e-08 60.1 42 71.4
PSO478G2903 Papaver somniferum HOM05D001525 ORTHO05D001397 1.1e-07 59.7 47 61.7
Peaxi162Scf00015g02222 Petunia axillaris HOM05D001525 ORTHO05D001397 1.1e-07 59.7 41 75.6
BcaB01g00123 Brassica carinata HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 63.6
BcaC07g39841 Brassica carinata HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
A09p48170 Brassica napus HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
C08p30430 Brassica napus HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
BolC8t50666H Brassica oleracea HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
BraA09t40273Z Brassica rapa HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
CSS0030813 Camellia sinensis var. sinensis HOM05D001525 ORTHO05D001397 1.4e-07 59.3 45 71.1
Carub.0005s2190 Capsella rubella HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
CAN.G1557.11 Capsicum annuum HOM05D001525 ORTHO05D001397 1.4e-07 59.3 40 77.5
Sp5g07220 Schrenkiella parvula HOM05D001525 ORTHO05D001397 1.4e-07 59.3 44 65.9
Aa31LG10G9860 Aethionema arabicum HOM05D001525 ORTHO05D001397 1.9e-07 58.9 44 65.9
BcaB02g08437 Brassica carinata HOM05D001525 ORTHO05D001397 1.9e-07 58.9 44 65.9
Cc02_g08500 Coffea canephora HOM05D001525 ORTHO05D001397 1.9e-07 58.9 41 68.3
PSO782G0983 Papaver somniferum HOM05D001525 ORTHO05D001397 1.9e-07 58.9 43 67.4
Thecc.10G058500 Theobroma cacao HOM05D001525 ORTHO05D001397 1.9e-07 58.9 42 73.8
HanXRQChr09g0247621 Helianthus annuus HOM05D001525 ORTHO05D001397 4.1e-07 57.8 50 66.0
Oeu025633.1 Olea europaea HOM05D001525 ORTHO05D001397 4.1e-07 57.8 42 73.8
BcaC02g09736 Brassica carinata HOM05D001525 ORTHO05D001397 5.4e-07 57.4 44 63.6
BolC4t25283H Brassica oleracea HOM05D001525 ORTHO05D001397 5.4e-07 57.4 44 63.6
ECA238G3625 Erigeron canadensis HOM05D001525 ORTHO05D001397 5.4e-07 57.4 45 68.9
PSO206G0017 Papaver somniferum HOM05D001525 ORTHO05D001397 5.4e-07 57.4 47 63.8
vmacro20112 Vaccinium macrocarpon HOM05D001525 ORTHO05D001397 5.4e-07 57.4 49 61.2
A05p06960 Brassica napus HOM05D001525 ORTHO05D001397 7.0e-07 57.0 43 65.1
HanXRQChr14g0457641 Helianthus annuus HOM05D001525 ORTHO05D001397 7.0e-07 57.0 45 66.7
PSO478G3865 Papaver somniferum HOM05D001525 ORTHO05D001397 7.0e-07 57.0 43 65.1
Dinv25957 Davidia involucrata HOM05D001525 ORTHO05D001397 9.2e-07 56.6 46 60.9
Peaxi162Scf00060g00413 Petunia axillaris HOM05D001525 ORTHO05D001397 9.2e-07 56.6 41 73.2
TAR369G0906 Trochodendron aralioides HOM05D001525 ORTHO05D001397 9.2e-07 56.6 46 65.2
GSVIVG01005964001 Vitis vinifera HOM05D001525 ORTHO05D001397 1.2e-06 56.2 50 58.0
Eucgr.K03172 Eucalyptus grandis HOM05D001525 ORTHO05D001397 1.6e-06 55.8 44 65.9
Nitab4.5_0000426g0130 Nicotiana tabacum HOM05D001525 ORTHO05D001397 1.6e-06 55.8 39 74.4
BcaB02g09121 Brassica carinata HOM05D001525 ORTHO05D001397 2.0e-06 55.5 43 62.8
BraA05t19660Z Brassica rapa HOM05D001525 ORTHO05D001397 2.0e-06 55.5 43 62.8
PSO782G0177 Papaver somniferum HOM05D001525 ORTHO05D001397 2.0e-06 55.5 43 62.8
Nn2g12872 Nelumbo nucifera HOM05D001525 ORTHO05D001397 2.7e-06 55.1 43 69.8
Nn2g12887 Nelumbo nucifera HOM05D001525 ORTHO05D001397 2.7e-06 55.1 42 69.0
Rhsim05G0187000 Rhododendron simsii HOM05D001525 ORTHO05D001397 2.7e-06 55.1 46 65.2
Actinidia19753 Actinidia chinensis HOM05D001525 ORTHO05D001397 3.5e-06 54.7 49 63.3
ECA232G1105 Erigeron canadensis HOM05D001525 ORTHO05D001397 3.5e-06 54.7 48 58.3
QL01p026397 Quercus lobata HOM05D001525 ORTHO05D001397 3.5e-06 54.7 44 61.4
CSS0011230 Camellia sinensis var. sinensis HOM05D001525 ORTHO05D001397 4.6e-06 54.3 60 56.7
Nn2g10507 Nelumbo nucifera HOM05D001525 ORTHO05D001397 4.6e-06 54.3 46 65.2
TAR375G0940 Trochodendron aralioides HOM05D001525 ORTHO05D001397 4.6e-06 54.3 46 65.2
Carub.0002s1242 Capsella rubella HOM05D001525 ORTHO05D001397 6.0e-06 53.9 46 58.7
Lsat_1_v5_gn_9_66461 Lactuca sativa HOM05D001525 ORTHO05D001397 6.0e-06 53.9 49 59.2
Nitab4.5_0004055g0070 Nicotiana tabacum HOM05D001525 ORTHO05D001397 6.0e-06 53.9 38 76.3
Psat3g048200 Pisum sativum HOM05D001525 ORTHO05D001397 6.0e-06 53.9 44 68.2
Sed0006719 Sechium edule HOM05D001525 ORTHO05D001397 6.0e-06 53.9 47 55.3
Lj5g0008672 Lotus japonicus HOM05D001525 ORTHO05D001397 7.8e-06 53.5 44 68.2


User provided reference genes

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