Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 0.0e+00 3477.6 1758 100.0
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 0.0e+00 2994.5 1751 87.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 0.0e+00 2988.4 1758 86.9
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 0.0e+00 2590.1 1759 77.7
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1329.7 1727 47.1
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1325.8 1827 46.2
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1322.0 1805 45.9
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1245.0 1790 44.6
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1217.6 1787 44.4
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1168.7 1815 42.1
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1164.8 1814 43.1
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1163.7 1874 41.7
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1149.0 1801 42.5
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1139.0 1796 42.4
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1119.8 1610 44.2
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1104.7 1796 40.4
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1100.5 1810 40.8
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1098.6 1803 40.9
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1089.7 1804 41.0
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1083.9 1766 39.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.4e-311 1073.2 1827 40.8
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.1e-310 1070.8 1815 40.8
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 1.1e-310 1070.8 1762 40.1
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 2.4e-310 1069.7 1808 39.8
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 3.1e-310 1069.3 1791 41.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.0e-309 1066.6 1823 40.6
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 7.7e-309 1064.7 1810 40.8
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.7e-308 1063.5 1816 40.6
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 2.1e-306 1056.6 1808 41.0
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 5.2e-305 1052.0 1803 41.0
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.2e-303 1046.6 1807 40.4
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 9.1e-302 1041.2 1821 39.6
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 8.0e-298 1028.1 1761 39.1
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 8.0e-298 1028.1 1761 39.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 6.8e-297 1025.0 1398 44.5
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 5.7e-296 1021.9 1753 38.2
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 5.2e-289 998.8 1766 37.7
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 2.2e-287 993.4 1818 38.1
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.8e-286 990.3 1837 37.9
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.3e-284 983.4 1770 37.2
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 3.8e-284 982.6 1785 37.4
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.1e-282 976.9 1804 38.5
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 8.9e-273 944.9 1774 38.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 6.4e-271 938.7 1270 42.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-268 931.0 1269 43.0
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.6e-268 928.3 1766 37.3
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 8.3e-263 911.8 1281 41.4
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 2.6e-256 890.2 1797 36.4
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.9e-251 874.0 1780 35.6
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 6.2e-250 869.0 2119 32.8
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.8e-248 862.4 1703 37.6
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 8.4e-247 858.6 1780 35.4
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 9.3e-246 855.1 1350 40.4
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.0e-244 850.1 1784 35.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.5e-243 847.8 1790 36.6
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 3.1e-241 840.1 1661 36.5
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 4.0e-241 839.7 1806 34.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 4.0e-241 839.7 1758 35.5
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.0e-240 837.4 1796 35.3
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.1e-234 817.4 1271 39.7
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 5.3e-233 812.8 1793 35.2
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.3e-233 812.8 1867 34.8
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.6e-232 810.4 1756 35.5
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 4.5e-232 809.7 1765 34.7
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.2e-231 807.4 1759 34.8
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.4e-230 804.7 1709 35.6
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 9.0e-225 785.4 1794 34.6
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.5e-224 784.6 1759 34.7
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 5.5e-222 776.2 1881 32.9
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 5.3e-217 759.6 811 50.7
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 6.9e-217 759.2 1785 34.1
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 2.1e-213 747.7 1786 33.8
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 2.7e-213 747.3 1764 34.2
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.0e-212 745.3 1526 37.9
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 6.7e-212 742.7 915 42.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 7.4e-211 739.2 1759 33.9
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.8e-210 737.3 1751 34.3
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 5.3e-209 733.0 1773 33.8
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.9e-206 724.5 1302 37.2
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 2.1e-205 721.1 1772 33.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 1.0e-204 718.8 1754 33.3
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.1e-203 715.3 1784 32.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 9.7e-203 712.2 1828 31.9
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.4e-201 707.6 1794 32.9
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.6e-192 677.6 789 45.8
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 6.3e-186 656.4 642 53.1
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.0e-184 651.4 1755 31.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 7.7e-184 649.4 1801 30.7
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 7.2e-182 642.9 672 50.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 4.8e-178 630.2 667 50.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 8.3e-170 602.8 1790 31.2
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 4.0e-156 557.4 1694 30.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 4.4e-155 553.9 1857 28.2
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 8.3e-154 549.7 1779 28.7
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.8e-141 508.1 1381 34.0
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 6.0e-136 490.3 901 33.1
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.6e-131 474.9 1152 35.6
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.2e-117 427.2 410 52.2
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.8e-92 345.9 650 35.8
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.9e-92 344.0 650 33.7
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.6e-88 332.8 747 35.5
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 5.7e-86 324.3 887 29.2
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 3.0e-79 302.0 600 35.2
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.2e-77 295.8 537 32.4
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.8e-76 292.7 468 36.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 7.5e-62 244.2 843 25.5
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.5e-59 235.3 842 28.9
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 5.0e-58 231.5 769 28.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.4e-55 223.4 821 30.1
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.0e-54 219.5 676 34.6
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.8e-52 213.0 665 26.2
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.3e-34 153.7 129 53.5
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.4e-31 143.7 417 34.3
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 8.9e-31 141.0 409 34.7
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.8e-30 138.3 807 27.9
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 3.9e-26 125.6 347 32.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 5.1e-26 125.2 131 42.0
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.2e-22 114.0 434 31.6
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 6.4e-13 81.6 92 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.4e-12 80.5 295 30.5
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 2.4e-12 79.7 184 34.2
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 7.1e-12 78.2 102 46.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 1.6e-11 77.0 59 64.4
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.7e-11 76.3 323 31.3
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 7.9e-11 74.7 230 36.5
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.3e-08 67.4 84 41.7
MELO3C021657.2 Cucumis melo HOM05D000115 ORTHO05D003511 1.3e-08 67.4 96 50.0
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 1.3e-08 67.4 206 33.0
ClCG09G019990 Citrullus lanatus HOM05D000115 ORTHO05D003511 4.5e-06 58.9 96 45.8


User provided reference genes

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