Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 4.1e-226 787.7 393 100.0
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 7.6e-132 474.6 386 66.8
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 2.4e-130 469.5 383 65.5
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 1.8e-128 463.4 383 65.3
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 2.5e-119 433.0 387 59.9
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 4.3e-119 432.2 389 59.6
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 5.7e-119 431.8 390 59.5
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 9.6e-119 431.0 389 59.9
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 6.3e-118 428.3 389 59.1
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 8.2e-118 427.9 390 59.0
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 2.4e-117 426.4 388 59.0
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 3.1e-117 426.0 390 58.2
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 5.3e-117 425.2 390 58.5
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 1.2e-116 424.1 390 58.5
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 1.2e-116 424.1 390 58.5
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 2.0e-116 423.3 388 58.8
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.6e-116 422.9 390 57.9
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 2.6e-116 422.9 389 58.6
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 5.9e-116 421.8 389 57.6
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.3e-115 420.6 389 58.1
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 1.7e-115 420.2 389 58.9
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.7e-115 420.2 390 57.7
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 8.5e-115 417.9 384 58.6
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 8.5e-115 417.9 390 58.5
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 1.1e-114 417.5 390 58.5
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.1e-114 417.5 389 57.6
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 1.4e-114 417.2 388 57.5
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.9e-114 416.8 383 58.5
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 3.2e-114 416.0 390 56.4
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 3.2e-114 416.0 390 56.4
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 3.2e-114 416.0 390 57.9
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 5.5e-114 415.2 389 58.6
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 7.2e-114 414.8 385 57.7
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 7.2e-114 414.8 386 58.5
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 9.3e-114 414.5 389 57.3
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 9.3e-114 414.5 388 57.2
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 1.2e-113 414.1 383 58.7
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.6e-113 413.7 386 58.3
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.1e-113 413.3 389 57.3
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.1e-113 413.3 389 57.3
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 2.7e-113 412.9 386 58.3
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.7e-113 412.9 386 58.3
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 2.7e-113 412.9 386 58.3
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 3.6e-113 412.5 388 56.4
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 3.6e-113 412.5 387 57.6
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 4.6e-113 412.1 389 56.0
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 4.6e-113 412.1 387 58.1
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 4.6e-113 412.1 389 57.8
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 4.6e-113 412.1 392 57.7
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 4.6e-113 412.1 390 57.7
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 7.9e-113 411.4 390 57.4
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 7.9e-113 411.4 390 57.2
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 1.0e-112 411.0 389 58.4
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.3e-112 410.6 386 58.0
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 1.8e-112 410.2 397 56.7
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 1.8e-112 410.2 388 56.7
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 2.3e-112 409.8 390 56.7
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 2.3e-112 409.8 389 58.1
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 3.0e-112 409.5 390 56.9
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 4.3e-111 405.6 382 57.3
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 5.7e-111 405.2 390 56.9
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.3e-110 404.1 388 57.0
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 1.6e-110 403.7 388 55.7
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 1.6e-110 403.7 388 55.7
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 2.2e-110 403.3 390 56.2
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 2.2e-110 403.3 386 57.0
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 3.7e-110 402.5 387 56.1
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 6.3e-110 401.7 387 56.3
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 8.2e-110 401.4 387 56.1
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 3.1e-109 399.4 388 56.7
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 3.1e-109 399.4 388 55.4
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 6.9e-109 398.3 390 56.4
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 1.2e-108 397.5 383 55.4
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 1.5e-108 397.1 388 54.4
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.5e-108 397.1 412 53.4
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.0e-108 396.7 389 55.3
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 2.0e-108 396.7 386 55.4
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 2.6e-108 396.4 389 55.3
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 3.4e-108 396.0 379 57.8
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 4.5e-108 395.6 389 55.3
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 7.7e-108 394.8 388 54.6
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 7.7e-108 394.8 389 55.0
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.3e-107 394.0 390 54.6
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 2.2e-107 393.3 389 55.3
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 3.8e-107 392.5 388 54.4
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.1e-106 391.0 384 55.7
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 1.4e-106 390.6 386 54.9
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 1.9e-106 390.2 387 55.3
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 3.2e-106 389.4 389 55.0
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 3.2e-106 389.4 370 58.1
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.2e-105 387.5 389 54.2
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 1.2e-105 387.5 393 55.7
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 1.6e-105 387.1 373 56.6
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 3.6e-105 386.0 388 54.6
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 3.6e-105 386.0 384 55.5
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 4.6e-105 385.6 389 54.0
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 4.6e-105 385.6 377 54.9
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 6.1e-105 385.2 389 54.5
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 1.0e-104 384.4 389 55.0
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 3.0e-104 382.9 389 54.2
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.1e-104 382.1 362 57.7
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 1.7e-102 377.1 388 54.1
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 2.8e-102 376.3 388 54.1
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 3.7e-102 375.9 388 52.6
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 1.4e-101 374.0 388 53.1
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.3e-101 372.1 389 53.7
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 1.9e-98 363.6 389 51.7
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 2.5e-98 363.2 349 57.3
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 7.2e-98 361.7 391 50.6
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 2.7e-97 359.8 387 51.7
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 6.1e-97 358.6 278 66.5
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 3.9e-96 355.9 383 52.7
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 6.3e-94 348.6 344 56.7
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 3.1e-93 346.3 258 68.2
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 7.0e-93 345.1 389 48.6
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 2.0e-84 317.0 385 46.8
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.5e-84 315.8 392 46.4
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 5.9e-84 315.5 329 54.4
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 2.5e-82 310.1 389 45.5
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 2.5e-82 310.1 328 53.7
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 2.7e-81 306.6 247 65.2
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 3.0e-80 303.1 324 54.0
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 8.8e-80 301.6 384 44.0
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 8.8e-80 301.6 328 51.8
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 7.0e-77 292.0 217 67.7
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 1.5e-74 284.3 330 49.7
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 9.5e-74 281.6 213 66.2
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 3.0e-72 276.6 212 67.0
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 5.7e-71 272.3 386 41.2
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.7e-71 272.3 356 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 3.7e-70 269.6 359 42.9
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 1.4e-69 267.7 278 54.3
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 2.4e-69 266.9 382 43.2
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.0e-59 232.6 330 45.5
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 3.3e-58 229.9 211 59.2
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 9.5e-58 228.4 249 53.0
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 2.8e-57 226.9 243 53.5
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 3.6e-57 226.5 392 36.2
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 4.0e-56 223.0 248 52.0
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 7.3e-50 202.2 170 64.1
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 8.1e-49 198.7 140 69.3
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 1.4e-48 198.0 194 56.2
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 4.0e-48 196.4 199 55.3
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 4.0e-48 196.4 191 54.5
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 2.7e-44 183.7 240 45.0
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 6.8e-40 169.1 383 30.8
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 2.0e-39 167.5 370 31.6
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 9.9e-39 165.2 379 30.6
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 6.0e-36 156.0 131 61.1
EL10Ac3g06649 Beta vulgaris HOM05D004167 ORTHO05D005012 1.6e-33 147.9 116 66.4
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 3.6e-33 146.7 368 28.3
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 3.1e-32 143.7 145 53.8
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 6.9e-32 142.5 258 33.7
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 3.5e-28 130.2 206 38.3
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 9.6e-26 122.1 124 54.0
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 1.5e-23 114.8 176 39.2
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 9.3e-21 105.5 170 38.8
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 3.0e-19 100.5 89 52.8
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 1.2e-15 88.6 140 40.0
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 3.8e-14 83.6 102 50.0
SalBow3G2867 Salvia bowleyana HOM05D037314 ORTHO05D005012 1.8e-08 64.7 39 74.4
SalBow3G3756 Salvia bowleyana HOM05D004167 ORTHO05D005012 3.1e-08 63.9 39 71.8
SalBow8G3469 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.5e-07 61.6 39 69.2
SalBow5G0433 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.3e-06 58.5 35 71.4
Nitab4.5_0000065g0050 Nicotiana tabacum HOM05D004167 ORTHO05D005012 3.8e-06 57.0 38 68.4


User provided reference genes

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