Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.8e-118 428.7 227 100.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.9e-114 416.0 207 98.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.5e-111 406.4 207 97.1
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.2e-109 397.9 207 93.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.0e-108 396.0 207 91.8
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.0e-96 357.1 209 85.2
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.0e-96 355.5 207 83.6
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.6e-94 348.6 213 81.7
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 6.2e-94 347.8 219 80.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.2e-94 347.8 207 81.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.8e-93 346.3 208 80.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.1e-93 345.5 212 81.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.0e-93 345.1 208 83.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 9.0e-93 344.0 209 81.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 9.0e-93 344.0 209 81.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.5e-92 343.2 207 82.1
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.6e-92 342.4 208 80.3
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 5.8e-92 341.3 209 82.8
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.3e-91 340.1 216 79.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.9e-91 339.0 218 79.8
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.9e-91 338.2 210 81.0
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 4.9e-91 338.2 210 81.0
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-91 337.8 207 81.6
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-91 337.8 207 81.6
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.4e-91 337.4 211 80.1
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 8.4e-91 337.4 208 78.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-90 337.0 208 81.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.1e-90 337.0 233 75.1
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.4e-90 335.9 233 74.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.4e-90 335.9 233 74.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.2e-90 335.1 202 80.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 4.2e-90 335.1 211 78.2
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 9.3e-90 334.0 211 78.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-89 333.6 233 74.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.2e-89 333.6 214 77.6
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.6e-89 333.2 213 77.0
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.1e-89 332.8 211 78.2
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.1e-89 332.8 210 78.6
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.5e-89 332.0 233 73.8
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.5e-89 332.0 233 73.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.6e-89 331.6 232 78.4
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.0e-89 331.3 209 79.9
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.8e-89 330.9 210 78.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.0e-88 330.5 206 78.6
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.3e-88 330.1 200 79.5
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.7e-88 329.7 210 78.6
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.0e-88 328.9 213 76.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.9e-88 328.6 209 77.5
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-87 327.0 208 76.9
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.5e-87 326.6 210 77.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-86 323.6 208 76.0
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.3e-86 323.6 208 76.0
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.1e-86 322.8 211 74.9
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.8e-86 322.4 214 77.1
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.8e-86 322.4 199 79.4
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.8e-86 321.6 199 79.4
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 6.2e-86 321.2 213 73.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 4.0e-85 318.5 210 78.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 9.0e-85 317.4 218 75.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.5e-84 316.6 212 75.5
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.5e-84 316.6 212 75.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.5e-84 316.6 210 73.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.6e-84 315.8 201 77.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 4.5e-84 315.1 198 74.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 9.9e-84 313.9 204 76.0
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 9.9e-84 313.9 197 78.2
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.3e-83 313.5 207 74.9
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.3e-83 313.5 197 78.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.8e-83 312.0 211 73.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 6.4e-83 311.2 210 72.4
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.4e-82 309.3 204 74.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.4e-82 309.3 212 71.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.2e-82 308.9 213 74.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.2e-82 308.5 209 73.2
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 9.3e-82 307.4 207 71.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-81 307.0 198 77.8
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.2e-81 307.0 194 78.4
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.2e-81 307.0 201 76.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.1e-81 306.2 214 71.0
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.7e-81 305.8 199 75.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.9e-79 299.7 200 72.0
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 3.3e-79 298.9 203 73.9
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.3e-79 298.5 213 69.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 9.6e-79 297.4 205 70.7
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.4e-77 293.5 221 67.4
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-77 293.5 213 68.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 6.9e-77 291.2 198 71.7
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.0e-76 289.7 191 71.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 8.4e-75 284.3 203 73.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.5e-74 282.7 194 71.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.2e-74 282.3 203 73.4
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 9.3e-74 280.8 206 69.9
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-73 279.3 201 68.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 4.6e-73 278.5 201 69.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.0e-73 278.1 201 68.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 7.9e-73 277.7 198 69.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-72 276.9 202 68.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.3e-72 276.2 207 68.1
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 5.1e-72 275.0 207 67.6
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.1e-72 275.0 207 68.1
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 5.1e-72 275.0 207 67.6
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 5.1e-72 275.0 207 67.6
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.1e-72 275.0 207 68.1
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 6.7e-72 274.6 207 68.6
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 8.7e-72 274.2 207 67.6
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-71 273.9 205 67.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.5e-71 273.5 207 67.1
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.9e-71 273.1 207 67.1
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.9e-71 273.1 207 67.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.9e-71 273.1 204 69.1
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.5e-71 272.7 204 68.1
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.3e-71 272.3 207 67.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 7.4e-71 271.2 204 68.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 9.6e-71 270.8 207 67.1
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.8e-70 269.2 204 65.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.1e-69 267.3 199 66.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-69 266.9 208 65.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.1e-69 265.8 197 69.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.2e-67 259.6 194 67.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.8e-67 258.8 196 64.3
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 5.0e-67 258.5 201 63.2
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.5e-65 252.3 195 63.1
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.0e-64 249.2 199 64.3
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.3e-62 243.8 216 63.0
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 8.2e-62 241.1 212 64.6
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.7e-59 233.4 143 79.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.6e-57 225.7 196 56.6
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.6e-57 225.3 164 68.9
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 6.1e-57 224.9 167 68.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.3e-51 207.2 165 62.4
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 5.0e-51 205.3 120 80.8
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.5e-50 203.0 203 55.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.8e-45 186.8 194 54.1
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 4.1e-45 185.7 121 71.9
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 5.9e-44 181.8 127 72.4
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.3e-40 169.9 111 69.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 5.2e-40 168.7 104 78.8
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 6.7e-40 168.3 102 77.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.3e-19 100.9 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.6e-15 86.7 94 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.8e-08 62.0 149 29.5
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 2.0e-07 60.5 150 30.0
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.4e-07 59.7 183 25.1
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.8e-07 58.9 103 29.1


User provided reference genes

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