Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.7e-93 344.4 189 100.0
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 6.3e-76 287.7 190 73.7
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 9.2e-75 283.9 189 84.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 6.8e-70 267.7 189 82.0
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-61 240.4 188 74.5
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 2.1e-39 166.4 220 42.3
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 8.1e-39 164.5 195 47.2
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 3.1e-38 162.5 197 46.2
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 6.9e-38 161.4 205 46.3
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 6.9e-38 161.4 205 46.3
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 9.0e-38 161.0 203 46.8
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 9.0e-38 161.0 210 46.7
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.0e-38 161.0 212 42.0
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 9.0e-38 161.0 190 47.4
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.2e-37 160.6 195 48.7
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.4e-37 159.1 203 42.4
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.4e-37 159.1 198 44.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 5.8e-37 158.3 107 68.2
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 5.8e-37 158.3 199 43.7
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.8e-37 158.3 195 41.5
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.3e-36 157.1 219 47.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-36 156.8 207 44.4
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 4.9e-36 155.2 209 44.5
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.4e-36 154.5 199 43.2
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 8.4e-36 154.5 112 63.4
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.9e-35 153.3 197 42.6
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 5.4e-35 151.8 186 45.7
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.3e-35 151.0 210 50.5
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 9.3e-35 151.0 199 42.7
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.2e-34 150.6 209 43.1
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.6e-34 150.2 101 67.3
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.1e-34 149.8 203 42.4
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.7e-34 149.4 221 41.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.7e-34 149.4 204 43.6
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.5e-34 149.1 191 41.9
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.6e-34 148.7 184 49.5
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.6e-34 148.7 88 73.9
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 6.0e-34 148.3 223 39.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 7.8e-34 147.9 216 42.1
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.3e-33 147.1 196 42.3
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.0e-33 146.0 206 41.7
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.0e-33 146.0 99 67.7
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.1e-32 144.1 188 47.9
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.1e-32 144.1 223 40.8
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.5e-32 143.7 87 73.6
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.5e-32 143.7 99 66.7
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.9e-32 143.3 204 42.6
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.5e-32 142.9 87 69.0
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 2.5e-32 142.9 127 55.1
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 5.6e-32 141.7 87 71.3
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 7.3e-32 141.4 101 66.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.3e-31 140.6 101 64.4
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 3.6e-31 139.0 110 60.0
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.6e-31 139.0 200 42.0
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 3.6e-31 139.0 97 67.0
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 4.8e-31 138.7 87 71.3
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.1e-30 137.5 197 39.6
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.1e-30 137.5 87 67.8
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.1e-30 137.5 88 73.9
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 3.1e-30 136.0 193 43.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.1e-30 136.0 210 51.9
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 4.0e-30 135.6 190 38.9
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 9.0e-30 134.4 107 60.7
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.2e-29 134.0 88 70.5
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.2e-29 134.0 95 64.2
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-29 134.0 84 70.2
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.2e-29 134.0 131 53.4
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.2e-29 134.0 191 39.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.0e-29 133.3 88 71.6
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.0e-29 133.3 107 58.9
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.0e-29 133.3 88 69.3
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.6e-29 132.9 101 60.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.6e-29 132.9 204 39.2
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.6e-29 132.9 97 64.9
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.4e-29 132.5 88 69.3
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.4e-29 132.5 88 69.3
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-29 132.5 84 69.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 4.5e-29 132.1 88 68.2
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 4.5e-29 132.1 92 60.9
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.5e-29 132.1 86 70.9
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 4.5e-29 132.1 88 70.5
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 4.5e-29 132.1 127 54.3
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 5.8e-29 131.7 88 69.3
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-29 131.7 84 69.0
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-29 131.7 87 66.7
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-29 131.7 87 66.7
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.3e-28 130.6 180 43.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.7e-28 130.2 205 39.5
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.9e-28 129.4 127 52.0
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.8e-28 129.0 188 39.9
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.9e-28 128.6 223 39.5
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-27 127.5 84 66.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-27 127.5 87 65.5
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 3.2e-27 125.9 87 65.5
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 5.4e-27 125.2 87 62.1
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.4e-27 125.2 87 64.4
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 7.1e-27 124.8 87 63.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.6e-26 122.1 90 64.4
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 4.3e-24 115.5 84 61.9
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.3e-24 115.5 198 35.9
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 9.6e-24 114.4 223 36.3
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 2.8e-23 112.8 117 50.4
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 2.8e-23 112.8 84 60.7
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 2.8e-23 112.8 117 50.4
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 2.8e-23 112.8 84 60.7
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.8e-23 112.8 96 56.2
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.8e-23 112.8 96 56.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 3.7e-23 112.5 84 59.5
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.7e-23 112.5 101 54.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 3.7e-23 112.5 84 59.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.7e-23 112.5 101 54.5
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 3.7e-23 112.5 84 59.5
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 8.1e-23 111.3 87 62.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.4e-22 110.5 78 61.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.8e-22 110.2 87 63.2
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.8e-22 110.2 87 63.2
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 9.0e-22 107.8 195 35.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.5e-21 107.1 107 49.5
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.0e-21 106.7 128 46.9
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.0e-21 106.7 180 37.2
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.6e-21 106.3 107 49.5
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.8e-21 105.1 128 46.1
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 7.6e-21 104.8 87 58.6
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 9.9e-21 104.4 144 43.8
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-20 104.0 101 50.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.3e-20 104.0 101 50.5
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.3e-20 104.0 101 52.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.7e-20 103.6 101 52.5
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.7e-20 103.6 200 34.5
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.2e-20 103.2 174 36.2
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-20 102.8 101 49.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.9e-20 102.8 101 49.5
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-20 102.8 101 49.5
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-20 102.8 101 49.5
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 3.8e-20 102.4 97 52.6
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 3.8e-20 102.4 89 53.9
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.1e-19 100.9 93 52.7
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-19 100.1 117 46.2
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-19 99.8 101 49.5
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.5e-19 99.8 101 49.5
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.5e-19 99.8 212 34.9
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.5e-19 99.8 97 50.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 7.1e-19 98.2 117 45.3
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 9.3e-19 97.8 80 58.8
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 6.0e-18 95.1 133 42.9
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 7.9e-18 94.7 117 44.4
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.1e-16 90.9 87 54.0
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.9e-16 90.1 87 51.7
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.5e-16 89.7 199 33.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 4.3e-16 89.0 76 55.3
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.6e-16 88.6 114 42.1
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.6e-15 87.0 117 41.9
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.1e-14 84.3 116 41.4
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.1e-14 82.8 82 48.8
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 4.0e-14 82.4 63 58.7
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.2e-13 80.9 83 48.2
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.7e-12 77.0 101 43.6
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.9e-12 76.3 188 31.9
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.4e-11 73.9 53 67.9
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 2.5e-11 73.2 196 31.6
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-10 70.9 117 37.6
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 1.2e-10 70.9 185 30.3
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.6e-10 68.9 121 38.0
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 6.1e-10 68.6 88 46.6
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.5e-08 63.9 93 43.0
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 3.3e-08 62.8 191 29.3
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 7.4e-08 61.6 193 29.0
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 3.7e-07 59.3 188 27.1
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 4.8e-07 58.9 51 60.8
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 6.9e-06 55.1 44 61.4
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 9.0e-06 54.7 49 55.1


User provided reference genes

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