Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 0.0e+00 1407.5 715 100.0
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 0.0e+00 1310.4 715 92.4
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 0.0e+00 1307.0 715 92.7
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 0.0e+00 1258.8 715 88.8
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 5.8e-279 964.1 713 66.8
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 7.1e-269 930.6 722 65.7
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 6.0e-268 927.5 718 65.5
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 8.1e-265 917.1 715 62.9
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.1e-264 916.8 706 64.7
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.8e-264 916.0 706 64.6
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 6.8e-264 914.1 738 62.2
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.5e-263 912.9 716 64.1
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 4.4e-263 911.4 715 63.4
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 4.9e-262 907.9 724 63.7
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 6.4e-262 907.5 712 64.0
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.9e-261 906.0 713 63.8
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 2.1e-260 902.5 686 65.3
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 2.7e-260 902.1 713 63.3
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.5e-258 896.3 733 61.4
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 1.6e-257 892.9 713 63.8
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.1e-256 890.2 718 63.5
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.1e-256 890.2 717 62.2
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 1.4e-256 889.8 720 62.9
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 1.2e-255 886.7 718 62.5
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.5e-255 886.3 733 60.7
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.6e-255 885.6 742 60.8
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 5.8e-255 884.4 745 60.4
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 7.6e-255 884.0 713 62.4
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.1e-253 880.2 652 65.6
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 1.9e-253 879.4 714 61.2
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 2.4e-253 879.0 734 61.4
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 1.2e-252 876.7 713 61.4
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.6e-252 876.3 715 63.1
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 6.0e-252 874.4 693 63.6
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.9e-250 869.4 713 61.4
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 1.9e-250 869.4 714 60.9
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.9e-250 869.4 716 61.7
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 7.3e-250 867.5 718 60.6
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 1.6e-249 866.3 712 60.8
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.6e-249 865.1 714 61.3
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 4.8e-249 864.8 714 61.1
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 1.1e-248 863.6 711 61.2
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.8e-248 862.8 715 62.2
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 1.5e-247 859.8 705 61.1
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 1.4e-245 853.2 712 61.4
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 8.7e-243 844.0 700 60.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 2.1e-241 839.3 714 59.9
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.1e-240 837.0 696 61.8
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 1.2e-239 833.6 683 61.2
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 6.0e-236 821.2 696 60.2
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 1.3e-235 820.1 719 58.6
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 3.0e-235 818.9 716 58.1
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 3.3e-234 815.5 713 58.1
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 1.1e-232 810.4 714 58.4
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 1.8e-232 809.7 716 57.3
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 4.0e-232 808.5 728 57.7
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.0e-231 806.2 652 61.5
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.0e-230 803.9 716 58.2
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.9e-229 799.7 696 59.3
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 7.1e-229 797.7 715 59.2
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 2.3e-227 792.7 718 58.4
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 3.0e-227 792.3 715 56.9
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.1e-226 790.4 651 60.2
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 1.5e-226 790.0 715 58.7
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 1.9e-226 789.6 720 57.6
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 3.3e-226 788.9 718 58.9
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 4.3e-226 788.5 706 57.4
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 4.8e-225 785.0 716 57.7
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 8.2e-225 784.3 716 57.5
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 1.8e-224 783.1 712 57.6
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 3.1e-224 782.3 715 58.3
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 6.9e-224 781.2 715 57.5
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 9.0e-224 780.8 715 56.9
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 2.6e-223 779.2 716 57.8
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 2.6e-223 779.2 715 57.8
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.7e-222 776.5 716 58.0
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 3.8e-222 775.4 718 57.2
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 6.5e-222 774.6 714 55.0
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 1.4e-221 773.5 716 58.0
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 1.9e-221 773.1 716 57.5
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 2.5e-221 772.7 679 58.5
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 2.5e-221 772.7 699 57.8
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 6.1e-220 768.1 620 61.6
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 9.7e-218 760.8 715 56.1
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.2e-217 759.6 670 58.4
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 2.2e-217 759.6 720 54.2
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 2.9e-214 749.2 705 56.3
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 5.0e-214 748.4 701 55.5
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 1.9e-213 746.5 600 62.8
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 2.5e-213 746.1 615 59.3
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 9.4e-213 744.2 632 60.9
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 3.0e-211 739.2 716 55.2
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 5.5e-205 718.4 785 50.6
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 7.2e-205 718.0 692 55.5
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 2.1e-204 716.5 717 54.0
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 2.0e-202 709.9 738 51.1
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 2.7e-196 689.5 616 57.6
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.3e-195 686.4 613 58.4
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 9.7e-194 681.0 720 50.6
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 8.2e-193 677.9 715 50.9
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 8.0e-188 661.4 710 51.5
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 9.1e-184 647.9 522 63.0
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 1.0e-182 644.4 710 50.1
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 6.8e-171 605.1 706 48.6
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 8.6e-166 588.2 618 51.3
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 3.6e-156 556.2 423 65.5
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 3.2e-152 543.1 532 55.6
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.6e-151 540.8 640 48.9
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 1.4e-147 527.7 506 55.9
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 6.2e-140 502.3 720 44.7
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.1e-133 481.5 422 57.1
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 5.8e-114 416.0 738 38.1
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 1.9e-112 411.0 776 36.0
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 7.4e-101 372.5 723 34.4
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 2.7e-87 327.4 521 39.7
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 4.1e-83 313.5 330 49.7
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 3.5e-82 310.5 345 47.0
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 9.4e-80 302.4 302 55.0
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.6e-61 241.1 250 50.0
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 9.8e-61 239.2 288 49.3
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 1.5e-53 215.3 284 45.1
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.8e-47 194.5 254 42.5
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 1.4e-46 192.2 167 59.3
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 4.3e-40 170.6 432 29.4
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 2.5e-32 144.8 488 27.9
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 4.4e-29 134.0 155 49.0
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 2.2e-28 131.7 130 51.5
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 3.5e-26 124.4 310 33.5
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.2e-20 105.1 64 79.7
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 1.3e-15 89.4 74 59.5
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 4.9e-12 77.4 101 42.6
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 4.6e-10 70.9 80 48.8
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 6.0e-10 70.5 67 58.2
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 1.5e-08 65.9 52 67.3


User provided reference genes

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