Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.5e-95 352.8 177 100.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.7e-86 322.8 185 91.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.9e-83 312.0 186 88.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 8.3e-70 267.3 183 78.7
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.2e-45 185.3 175 61.1
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-44 183.3 200 55.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-44 183.3 200 55.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.1e-44 183.0 204 56.4
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.1e-44 183.0 200 55.5
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 7.8e-44 181.0 204 54.9
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.3e-43 179.5 202 54.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.9e-43 178.7 213 52.1
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.5e-42 176.8 205 53.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.5e-42 176.0 200 54.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.3e-42 175.6 213 51.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.3e-42 175.6 213 51.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 7.3e-42 174.5 204 52.5
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 7.3e-42 174.5 200 54.0
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 9.6e-42 174.1 204 52.9
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.8e-41 171.8 189 52.4
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 6.2e-41 171.4 204 51.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 8.1e-41 171.0 198 49.5
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 8.1e-41 171.0 199 53.3
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.4e-40 170.2 203 51.7
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.8e-40 169.9 213 49.8
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-40 169.9 213 49.8
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.8e-40 169.9 213 49.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.0e-40 168.7 186 56.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 6.9e-40 167.9 193 50.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.5e-39 166.8 177 54.8
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.4e-39 165.6 203 52.7
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 4.4e-39 165.2 190 51.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 4.4e-39 165.2 173 54.3
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 5.8e-39 164.9 197 51.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 7.6e-39 164.5 199 51.3
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 9.9e-39 164.1 204 50.0
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-38 163.3 207 52.7
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-38 163.3 207 52.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.7e-38 163.3 207 52.7
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-37 160.2 204 50.0
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-37 160.2 173 59.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.4e-37 159.5 197 49.7
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 4.2e-37 158.7 197 51.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.2e-37 158.7 198 51.0
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 5.4e-37 158.3 206 50.0
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 7.1e-37 157.9 213 48.4
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.2e-36 157.1 173 51.4
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.6e-36 156.8 197 52.3
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 6.0e-36 154.8 197 48.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 7.9e-36 154.5 192 50.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 7.9e-36 154.5 191 50.3
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.7e-35 153.3 191 49.2
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 2.3e-35 152.9 173 53.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.1e-35 151.8 197 49.2
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 6.6e-35 151.4 192 48.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.9e-34 149.8 197 48.2
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.3e-34 149.1 190 49.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.3e-34 148.7 208 44.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.3e-34 147.9 212 46.2
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-33 146.7 186 50.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.1e-33 146.4 170 52.9
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.1e-33 146.4 198 47.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 6.2e-33 144.8 185 49.2
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 8.1e-33 144.4 188 47.3
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.1e-32 144.1 188 49.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.4e-32 143.7 189 48.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.8e-32 143.3 174 48.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-32 143.3 205 46.8
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.4e-32 142.9 211 47.9
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.1e-32 142.5 163 54.6
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 5.3e-32 141.7 199 47.7
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 5.3e-32 141.7 219 44.3
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.9e-32 141.4 206 47.6
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.2e-31 140.6 192 46.4
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.5e-31 140.2 185 50.8
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.0e-31 139.8 202 45.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.0e-31 139.8 209 45.0
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.0e-31 139.8 177 51.4
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.6e-31 139.4 213 46.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.6e-31 139.4 167 51.5
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.8e-31 138.3 163 53.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.3e-30 137.1 236 41.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.9e-30 136.0 176 49.4
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.9e-30 135.2 184 51.1
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.9e-30 135.2 184 51.1
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 8.4e-30 134.4 199 46.7
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 8.4e-30 134.4 180 48.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.1e-29 134.0 164 47.0
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.4e-29 133.7 120 59.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 1.4e-29 133.7 204 43.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.9e-29 133.3 181 46.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 2.4e-29 132.9 207 45.9
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.4e-29 131.7 227 42.7
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 9.3e-29 131.0 204 44.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.6e-28 130.2 197 44.2
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.6e-28 130.2 198 46.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.6e-28 130.2 185 44.3
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.6e-28 130.2 193 44.0
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 3.5e-28 129.0 161 48.4
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.6e-28 128.6 163 47.9
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 4.6e-28 128.6 161 48.4
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 6.0e-28 128.3 175 45.7
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.9e-28 127.9 165 46.1
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.9e-28 127.9 189 42.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 7.9e-28 127.9 162 47.5
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 7.9e-28 127.9 190 43.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-27 127.5 170 47.1
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-27 127.1 170 47.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.3e-27 127.1 174 46.0
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-27 126.7 195 45.1
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-27 126.3 179 45.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.0e-27 125.9 178 44.9
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 3.9e-27 125.6 208 40.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.9e-27 125.6 179 43.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.1e-27 125.2 153 52.3
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 5.1e-27 125.2 201 43.8
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.5e-26 123.6 189 42.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.9e-26 123.2 170 44.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-26 122.9 163 46.0
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.5e-26 122.9 189 42.9
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 2.5e-26 122.9 191 41.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.5e-26 122.9 206 42.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.6e-26 121.7 174 45.4
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 9.6e-26 120.9 160 46.2
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 9.6e-26 120.9 164 45.7
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.6e-25 120.2 163 46.6
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.6e-25 120.2 164 45.7
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-25 120.2 199 42.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.1e-25 119.8 197 43.7
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.8e-25 119.4 185 43.2
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.8e-25 119.4 196 42.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.8e-25 119.4 185 43.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.8e-25 119.4 193 40.9
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.8e-25 119.4 116 57.8
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-25 119.0 158 46.2
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 6.2e-25 118.2 161 44.7
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 6.2e-25 118.2 191 42.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 8.1e-25 117.9 185 42.7
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.1e-25 117.9 144 47.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.4e-24 116.3 185 42.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.4e-24 116.3 166 44.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.4e-24 116.3 207 41.5
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.1e-24 115.9 214 38.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 4.0e-24 115.5 158 44.9
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 9.0e-24 114.4 146 48.6
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 7.6e-23 111.3 218 39.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 7.6e-23 111.3 218 39.4
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 7.6e-23 111.3 189 40.2
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.0e-22 110.9 219 39.3
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.3e-22 110.5 195 39.5
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.2e-22 109.8 167 43.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.9e-22 109.4 181 43.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-21 107.5 110 53.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.9e-21 106.7 184 44.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.5e-21 105.1 145 45.5
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.3e-21 104.4 166 44.0
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 2.7e-20 102.8 144 46.5
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.9e-20 101.3 150 44.0
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.3e-18 95.5 134 44.0
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.3e-18 95.5 113 53.1
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 8.2e-17 91.3 202 37.6
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-16 90.9 141 42.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-16 90.9 173 42.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-16 89.7 175 40.6
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 5.3e-16 88.6 124 43.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 7.6e-15 84.7 113 46.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.7e-14 83.6 103 50.5
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.9e-14 82.8 276 30.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.8e-14 82.4 170 40.0
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.0e-14 82.0 179 40.8
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-14 82.0 171 40.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 8.4e-14 81.3 170 39.4
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-13 80.9 171 40.4
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.1e-13 80.9 169 39.6
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.4e-13 80.5 146 36.3
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 3.2e-13 79.3 180 38.9
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.2e-13 79.3 99 50.5
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.2e-13 78.2 116 43.1
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 9.3e-13 77.8 171 39.2
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-12 77.4 151 35.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 6.3e-09 65.1 146 36.3
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.2e-07 60.8 149 32.9
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.2e-07 60.8 64 53.1
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.0e-07 60.1 71 49.3


User provided reference genes

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