Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 5.3e-87 324.3 163 100.0
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 5.3e-79 297.7 163 90.8
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.7e-77 292.7 163 89.0
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 2.3e-58 229.2 163 73.6
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 6.3e-40 167.9 148 60.1
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 3.1e-39 165.6 181 51.4
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 1.6e-38 163.3 162 53.7
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 3.5e-38 162.2 165 56.4
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 4.5e-38 161.8 171 55.6
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 5.0e-37 158.3 166 53.6
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.2e-36 155.2 152 53.9
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 4.2e-36 155.2 153 52.3
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 5.5e-36 154.8 169 54.4
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 9.4e-36 154.1 176 52.3
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.1e-35 152.9 153 52.3
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 4.7e-35 151.8 153 58.2
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 1.0e-34 150.6 139 59.7
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.4e-34 150.2 151 52.3
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.4e-34 150.2 151 52.3
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.3e-34 149.4 153 54.2
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 5.2e-34 148.3 162 52.5
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 6.8e-34 147.9 153 51.6
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 8.8e-34 147.5 174 50.0
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 2.6e-33 146.0 166 51.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 9.8e-33 144.1 157 52.2
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 9.8e-33 144.1 175 46.9
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 1.3e-32 143.7 149 53.0
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 4.8e-32 141.7 153 54.2
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 6.3e-32 141.4 152 50.7
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.7e-30 136.0 171 45.6
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.9e-30 134.8 144 50.7
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.0e-29 134.0 155 47.7
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.9e-29 132.5 168 47.6
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 2.9e-29 132.5 147 46.3
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 5.0e-29 131.7 166 47.6
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 3.3e-28 129.0 168 44.6
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 4.2e-28 128.6 175 43.4
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 4.2e-28 128.6 150 52.0
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 4.2e-28 128.6 172 46.5
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 7.2e-28 127.9 142 49.3
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 7.2e-28 127.9 153 49.0
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 3.6e-27 125.6 149 49.7
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 3.6e-27 125.6 199 41.2
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 4.7e-27 125.2 155 45.2
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 4.7e-27 125.2 143 46.2
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 6.1e-27 124.8 167 44.3
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 1.0e-26 124.0 150 46.0
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-26 123.6 200 41.5
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 3.0e-26 122.5 171 43.9
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 3.0e-26 122.5 168 49.4
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 4.0e-26 122.1 200 41.0
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 4.0e-26 122.1 140 47.1
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 1.2e-25 120.6 136 51.5
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 2.6e-25 119.4 132 47.7
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.6e-25 119.4 171 44.4
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 3.4e-25 119.0 176 40.9
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 3.4e-25 119.0 161 45.3
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 3.4e-25 119.0 179 41.3
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 7.5e-25 117.9 149 46.3
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 9.8e-25 117.5 171 44.4
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 9.8e-25 117.5 142 47.9
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 9.8e-25 117.5 142 45.8
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 9.8e-25 117.5 146 45.9
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 1.7e-24 116.7 200 38.5
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 2.2e-24 116.3 151 43.7
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 2.2e-24 116.3 145 46.2
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 2.2e-24 116.3 166 47.0
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.8e-24 115.9 169 43.2
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 3.7e-24 115.5 162 43.2
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 8.3e-24 114.4 165 41.8
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 8.3e-24 114.4 165 41.8
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 8.3e-24 114.4 132 49.2
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 1.4e-23 113.6 137 44.5
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 2.4e-23 112.8 159 40.9
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 4.1e-23 112.1 130 48.5
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 5.4e-23 111.7 155 45.2
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.2e-22 110.5 152 42.1
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 1.6e-22 110.2 164 41.5
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 3.5e-22 109.0 152 43.4
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 3.5e-22 109.0 152 43.4
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 4.5e-22 108.6 176 42.0
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 4.5e-22 108.6 145 43.4
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 7.8e-22 107.8 155 45.2
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.0e-21 107.5 174 38.5
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 1.3e-21 107.1 153 44.4
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 1.7e-21 106.7 154 45.5
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 1.7e-21 106.7 154 45.5
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.7e-21 106.7 162 40.7
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.9e-21 105.9 137 44.5
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 2.9e-21 105.9 150 42.7
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 6.6e-21 104.8 148 40.5
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.1e-20 104.0 171 39.8
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 2.5e-20 102.8 146 45.2
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 2.5e-20 102.8 136 42.6
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 3.3e-20 102.4 154 42.2
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 4.3e-20 102.1 162 41.4
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 5.6e-20 101.7 170 42.4
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 7.3e-20 101.3 151 43.0
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 9.5e-20 100.9 155 41.9
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.2e-19 100.5 131 45.8
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 1.2e-19 100.5 168 39.9
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 1.6e-19 100.1 169 39.6
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.6e-19 100.1 158 42.4
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 3.1e-18 95.9 154 42.2
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 5.2e-18 95.1 123 42.3
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 6.8e-18 94.7 132 45.5
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 8.9e-18 94.4 166 39.2
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 8.9e-18 94.4 218 33.5
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 2.0e-17 93.2 204 34.8
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 3.4e-17 92.4 141 42.6
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 4.4e-17 92.0 182 37.4
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 7.5e-17 91.3 186 33.9
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 1.3e-16 90.5 140 39.3
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 3.7e-16 89.0 188 31.9
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 6.4e-16 88.2 67 61.2
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 1.4e-15 87.0 79 54.4
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 1.4e-15 87.0 166 36.1
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 1.4e-15 87.0 207 32.4
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 3.2e-15 85.9 141 37.6
Zm00001eb157680 Zea mays HOM05D005169 ORTHO05D006436 3.2e-15 85.9 152 37.5
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 7.0e-15 84.7 122 43.4
Duzib147G0144 Durio zibethinus HOM05D005169 ORTHO05D006436 3.5e-14 82.4 124 44.4
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.0e-13 80.9 144 35.4
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.3e-13 80.5 177 31.1
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 8.6e-13 77.8 131 37.4
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.9e-12 76.6 128 39.1
HPP92_008039 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.9e-12 76.6 151 39.7
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 2.5e-12 76.3 78 48.7
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 2.5e-12 76.3 78 48.7
Zm00001eb296260 Zea mays HOM05D005169 ORTHO05D006436 5.6e-12 75.1 138 38.4
MD09G1031300 Malus domestica HOM05D005169 ORTHO05D006436 3.6e-11 72.4 100 49.0
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 1.4e-10 70.5 133 33.8
SEGI_21704 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 6.8e-10 68.2 132 34.8
SEGI_19138 Sequoiadendron giganteum HOM05D005169 ORTHO05D006436 1.5e-09 67.0 125 35.2


User provided reference genes

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