Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 0.0e+00 1136.7 564 100.0
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.9e-216 756.1 583 70.3
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 6.7e-214 747.7 580 70.0
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.2e-186 657.1 523 67.7
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.2e-164 583.2 540 57.4
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 3.5e-162 575.9 568 54.4
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 3.8e-161 572.4 557 55.3
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 2.5e-160 569.7 563 55.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.1e-159 565.1 555 55.0
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 9.8e-157 557.8 566 53.9
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.1e-155 554.3 570 53.2
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.9e-155 553.5 564 53.4
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 3.2e-155 552.7 563 53.5
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 5.4e-155 552.0 543 55.1
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.2e-154 550.8 562 52.5
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.0e-154 550.1 564 53.2
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.7e-154 549.7 552 53.8
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 4.6e-154 548.9 553 54.1
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.0e-153 547.7 562 53.0
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 5.0e-153 545.4 557 53.3
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 5.0e-153 545.4 575 53.6
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.9e-152 543.5 566 51.8
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.9e-152 543.5 555 53.7
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 4.3e-152 542.3 559 52.4
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 5.6e-152 542.0 561 52.6
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.6e-151 540.4 568 51.6
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.6e-151 540.4 566 51.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.1e-151 540.0 556 52.9
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 2.8e-151 539.7 545 54.7
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 4.7e-151 538.9 568 52.1
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 6.2e-151 538.5 560 53.8
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 6.2e-151 538.5 568 51.8
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 2.0e-149 533.5 600 50.2
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.0e-149 533.5 544 52.2
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.4e-149 532.3 556 53.1
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 7.5e-149 531.6 543 53.6
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.7e-148 530.4 564 52.5
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 2.2e-148 530.0 552 52.2
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 3.7e-148 529.3 556 51.6
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.9e-148 528.9 576 52.6
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.4e-147 527.3 549 52.3
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 2.4e-147 526.6 568 50.2
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 9.2e-147 524.6 580 51.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 2.7e-146 523.1 514 55.3
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 4.6e-146 522.3 560 49.6
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 2.3e-145 520.0 544 51.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 6.6e-145 518.5 582 49.7
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.5e-144 514.6 536 52.8
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 9.5e-144 514.6 589 50.1
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.2e-143 514.2 549 51.4
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 6.2e-143 511.9 579 50.4
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 2.3e-142 510.0 582 49.8
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.6e-141 506.5 553 50.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 3.4e-141 506.1 577 49.4
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.3e-140 504.2 572 49.7
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.3e-140 504.2 543 51.0
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.7e-140 503.8 556 48.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.7e-140 502.7 565 49.9
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 6.4e-140 501.9 537 50.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.9e-139 500.4 554 50.7
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 7.1e-139 498.4 562 48.9
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 9.2e-139 498.0 552 49.8
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.7e-137 493.8 539 51.0
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 5.1e-137 492.3 565 47.4
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.2e-135 487.6 598 45.5
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.6e-135 487.3 551 48.1
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.8e-135 486.5 568 48.6
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.8e-134 483.8 565 47.8
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 5.2e-134 482.3 544 49.8
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 6.8e-134 481.9 548 49.5
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.4e-133 479.2 557 48.5
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.8e-132 476.1 568 48.8
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.4e-131 474.2 591 46.4
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.4e-131 473.4 553 47.7
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 4.2e-131 472.6 555 48.1
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 6.0e-130 468.8 547 49.4
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.0e-129 468.0 567 46.7
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.5e-128 464.2 578 46.5
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.5e-128 463.4 531 50.1
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 2.1e-127 460.3 561 46.7
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 3.6e-127 459.5 485 51.8
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.1e-126 458.0 561 48.3
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.4e-125 453.0 577 45.6
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 2.2e-124 450.3 519 49.7
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 3.5e-122 443.0 483 51.1
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.0e-121 441.4 568 46.7
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.3e-120 436.4 562 42.3
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 2.1e-119 433.7 495 49.3
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.4e-118 430.3 483 49.7
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.3e-116 424.5 533 47.3
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.3e-113 414.5 535 45.2
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 3.9e-113 412.9 459 49.9
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 4.0e-110 402.9 552 40.8
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.9e-102 375.6 454 48.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 3.4e-101 373.2 541 39.7
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 5.7e-96 355.9 596 37.1
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 9.7e-96 355.1 456 45.8
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 9.0e-94 348.6 556 40.5
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.2e-92 344.0 397 49.6
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 4.5e-85 319.7 216 72.7
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 4.5e-85 319.7 220 72.7
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.1e-83 315.1 543 36.1
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.4e-75 288.1 240 64.2
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 3.0e-73 280.4 189 69.3
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.6e-66 258.1 186 66.1
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.7e-58 230.7 167 69.5
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 5.4e-54 216.5 181 64.1
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 6.6e-52 209.5 405 33.6
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 5.7e-48 196.4 408 35.5
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 7.3e-43 179.5 106 80.2
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 1.1e-38 165.6 124 59.7
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 5.4e-38 163.3 96 78.1
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 3.6e-34 150.6 121 62.0
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.5e-32 145.2 134 57.5
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.6e-29 135.2 87 65.5
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 5.1e-28 130.2 202 44.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 3.6e-26 124.0 391 27.1
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 3.7e-23 114.0 101 59.4
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.3e-19 100.5 282 28.4
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 1.6e-18 98.6 108 50.9
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 2.0e-16 91.7 111 45.9
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.6e-16 91.3 165 38.8
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.6e-16 91.3 118 42.4
ClCG03G009890 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.4e-16 90.5 151 35.8
ClCG09G014290 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.6e-13 82.0 151 30.5
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 6.0e-13 80.1 56 60.7
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.0e-13 80.1 46 73.9
ClCG03G010050 Citrullus lanatus HOM05D016213 ORTHO05D000002 1.0e-12 79.3 151 29.8
ClCG06G010650 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.0e-12 79.3 60 56.7
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 8.7e-12 76.3 53 60.4
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.9e-11 75.1 77 49.4
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.9e-11 75.1 77 49.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.9e-09 66.6 32 93.8
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.9e-09 66.6 32 93.8
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.5e-08 65.5 64 56.2
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.6e-08 64.7 33 90.9
Sed0022134 Sechium edule HOM05D000004 ORTHO05D000002 4.4e-08 63.9 122 30.3
MELO3C028848.2 Cucumis melo HOM05D009641 ORTHO05D013069 7.6e-08 63.2 56 51.8
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 9.9e-08 62.8 33 84.8
ClCG03G011360 Citrullus lanatus HOM05D000003 ORTHO05D000006 3.8e-07 60.8 111 36.0
ClCG03G010070 Citrullus lanatus HOM05D000004 ORTHO05D000002 4.9e-07 60.5 68 42.6
ClCG05G011000 Citrullus lanatus HOM05D000004 ORTHO05D000002 6.4e-07 60.1 125 32.0
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 3.2e-06 57.8 245 26.9
Sopen00g004920 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-06 57.4 113 27.4


User provided reference genes

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