Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G002970 Citrullus lanatus HOM05D007955 ORTHO05D010034 2.3e-59 231.9 105 100.0
ClCG09G017850 Citrullus lanatus HOM05D007955 ORTHO05D010034 2.3e-59 231.9 105 100.0
MELO3C021951.2 Cucumis melo HOM05D007955 ORTHO05D010034 1.6e-36 156.0 108 71.3
CsaV3_2G014460 Cucumis sativus L. HOM05D007955 ORTHO05D010034 2.7e-36 155.2 104 70.2
Duzib177G0365 Durio zibethinus HOM05D007955 ORTHO05D010034 2.6e-31 138.7 78 78.2
CANSAT25G1976 Cannabis sativa HOM05D007955 ORTHO05D010034 4.5e-31 137.9 95 64.2
Gohir.A05G273100 Gossypium hirsutum HOM05D007955 ORTHO05D010034 4.5e-31 137.9 78 78.2
arahy.Tifrunner.gnm1.ann1.6E9FUG Arachis hypogaea HOM05D007955 ORTHO05D010034 5.9e-31 137.5 94 68.1
Gohir.D05G275500 Gossypium hirsutum HOM05D007955 ORTHO05D010034 5.9e-31 137.5 87 73.6
Gorai.009G288600 Gossypium raimondii HOM05D007955 ORTHO05D010034 5.9e-31 137.5 87 73.6
Nitab4.5_0003211g0020 Nicotiana tabacum HOM05D007955 ORTHO05D010034 5.9e-31 137.5 92 69.6
Thecc.08G188200 Theobroma cacao HOM05D007955 ORTHO05D010034 5.9e-31 137.5 82 75.6
Dinv41742 Davidia involucrata HOM05D007955 ORTHO05D010034 1.0e-30 136.7 63 90.5
VMungo1127G1330 Vigna mungo HOM05D007955 ORTHO05D010034 1.0e-30 136.7 80 72.5
Thhalv10009125m.g Eutrema salsugineum HOM05D007955 ORTHO05D010034 1.3e-30 136.3 63 90.5
arahy.Tifrunner.gnm1.ann1.T5U9L2 Arachis hypogaea HOM05D007955 ORTHO05D010034 1.7e-30 136.0 78 78.2
CDE05G3389 Ceratophyllum demersum HOM05D007955 ORTHO05D010034 1.7e-30 136.0 63 88.9
Sopen11g011230 Solanum pennellii HOM05D007955 ORTHO05D010034 1.7e-30 136.0 81 76.5
AT1G22630 Arabidopsis thaliana HOM05D007955 ORTHO05D010034 2.9e-30 135.2 63 88.9
Carub.0001s2214 Capsella rubella HOM05D007955 ORTHO05D010034 2.9e-30 135.2 63 88.9
CARHR023000 Cardamine hirsuta HOM05D007955 ORTHO05D010034 2.9e-30 135.2 63 88.9
Hma1.2p1_0004F.1_g003980 Hydrangea macrophylla HOM05D007955 ORTHO05D010034 2.9e-30 135.2 63 90.5
Nitab4.5_0002013g0010 Nicotiana tabacum HOM05D007955 ORTHO05D010034 2.9e-30 135.2 61 93.4
Sp1g20140 Schrenkiella parvula HOM05D007955 ORTHO05D010034 2.9e-30 135.2 63 88.9
AL1G36160 Arabidopsis lyrata HOM05D007955 ORTHO05D010034 3.8e-30 134.8 63 88.9
Sc23g0001440 Simmondsia chinensis HOM05D007955 ORTHO05D010034 3.8e-30 134.8 63 90.5
BcaC07g39172 Brassica carinata HOM05D007955 ORTHO05D010034 5.0e-30 134.4 63 88.9
Lsat_1_v5_gn_1_12280 Lactuca sativa HOM05D007955 ORTHO05D010034 6.5e-30 134.0 87 72.4
Solyc11g021365.2 Solanum lycopersicum HOM05D007955 ORTHO05D010034 8.5e-30 133.7 81 75.3
THA.LOC104809734 Tarenaya hassleriana HOM05D007955 ORTHO05D010034 8.5e-30 133.7 61 86.9
HanXRQChr02g0044251 Helianthus annuus HOM05D007955 ORTHO05D010034 1.1e-29 133.3 63 88.9
BolC8t49802H Brassica oleracea HOM05D007955 ORTHO05D010034 1.5e-29 132.9 63 87.3
CSS0011086 Camellia sinensis var. sinensis HOM05D007955 ORTHO05D010034 1.9e-29 132.5 63 87.3
Hund16783 Selenicereus undatus HOM05D007955 ORTHO05D010034 1.9e-29 132.5 85 68.2
PGR042G1239 Punica granatum HOM05D007955 ORTHO05D010034 2.5e-29 132.1 63 88.9
QL02p025993 Quercus lobata HOM05D007955 ORTHO05D010034 2.5e-29 132.1 62 87.1
Potri.013G108100 Populus trichocarpa HOM05D007955 ORTHO05D010034 3.2e-29 131.7 61 90.2
EL10Ac1g00118 Beta vulgaris HOM05D007955 ORTHO05D010034 4.2e-29 131.3 63 87.3
Eucgr.F03002 Eucalyptus grandis HOM05D007955 ORTHO05D010034 4.2e-29 131.3 63 87.3
Manes.18G103900 Manihot esculenta HOM05D007955 ORTHO05D010034 7.2e-29 130.6 86 69.8
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 9.4e-29 130.2 100 62.0
MD15G1408300 Malus domestica HOM05D007955 ORTHO05D010034 9.4e-29 130.2 84 66.7
RcHm_v2.0_Chr7g0228151 Rosa chinensis HOM05D007955 ORTHO05D010034 9.4e-29 130.2 103 61.2
Aa31LG7G6520 Aethionema arabicum HOM05D007955 ORTHO05D010034 1.6e-28 129.4 63 84.1
FvH4_5g32101 Fragaria vesca HOM05D007955 ORTHO05D010034 2.7e-28 128.6 63 85.7
DCAR_001459 Daucus carota HOM05D007955 ORTHO05D010034 6.1e-28 127.5 65 80.0
MBI03_g18672_MAGBIO Magnolia biondii HOM05D007955 ORTHO05D010034 6.1e-28 127.5 80 71.2
TWI14G1427 Tripterygium wilfordii HOM05D007955 ORTHO05D010034 6.1e-28 127.5 63 84.1
Rhsim06G0114600 Rhododendron simsii HOM05D007955 ORTHO05D010034 8.0e-28 127.1 83 69.9
Glyma.08G239000 Glycine max HOM05D007955 ORTHO05D010034 1.5e-26 122.9 81 70.4
Migut.C01298 Erythranthe guttata HOM05D007955 ORTHO05D010034 2.4e-24 115.5 94 58.5
Aqoxy6G00096 Aquilegia oxysepala HOM05D007955 ORTHO05D010034 4.1e-24 114.8 102 53.9
C08p21650 Brassica napus HOM05D000726 ORTHO05D010034 5.3e-24 114.4 55 83.6
BraA08t34774Z Brassica rapa HOM05D000726 ORTHO05D010034 5.3e-24 114.4 55 83.6
A08p28450 Brassica napus HOM05D000726 ORTHO05D010034 1.0e-22 110.2 55 81.8
Pp3c19_10130 Physcomitrium patens HOM05D007955 ORTHO05D010034 5.0e-22 107.8 52 84.6
Peaxi162Scf00391g00733 Petunia axillaris HOM05D007955 ORTHO05D010034 1.5e-21 106.3 62 75.8
Nn3g20179 Nelumbo nucifera HOM05D007955 ORTHO05D010034 4.2e-21 104.8 46 97.8
HPP92_004623 Vanilla planifolia HOM05D007955 ORTHO05D010034 5.5e-21 104.4 63 71.4
PGSC0003DMG400009285 Solanum tuberosum HOM05D007955 ORTHO05D010034 7.2e-21 104.0 61 75.4
CiPaw.07G236600 Carya illinoinensis HOM05D007955 ORTHO05D010034 9.4e-21 103.6 65 70.8
Cfa012936 Carpinus fangiana HOM05D007955 ORTHO05D010034 2.7e-20 102.1 65 70.8
Haze_21296 Corylus avellana HOM05D007955 ORTHO05D010034 2.7e-20 102.1 65 70.8
SEGI_23617 Sequoiadendron giganteum HOM05D007955 ORTHO05D010034 3.6e-20 101.7 95 52.6
SMO119G0376 Selaginella moellendorffii HOM05D007955 ORTHO05D010034 8.0e-20 100.5 62 69.4
TPR.G34150 Trifolium pratense HOM05D007955 ORTHO05D010034 1.0e-19 100.1 67 67.2
Medtr4g032905 Medicago truncatula HOM05D007955 ORTHO05D010034 1.8e-19 99.4 67 65.7
Os05g0105800 Oryza sativa ssp. japonica HOM05D007955 ORTHO05D010034 3.0e-19 98.6 45 93.3
Prupe.1G552800 Prunus persica HOM05D007955 ORTHO05D010034 4.0e-19 98.2 45 91.1
AagrBONN_evm.TU.Sc2ySwM_228.898 Anthoceros agrestis HOM05D007955 ORTHO05D010034 3.4e-18 95.1 100 49.0
SGA_v2.0_scaffold24G10574 Striga asiatica HOM05D007955 ORTHO05D010034 3.4e-18 95.1 72 62.5
vmacro12469 Vaccinium macrocarpon HOM05D007955 ORTHO05D010034 7.5e-18 94.0 46 89.1
PSO170G1023 Papaver somniferum HOM05D007955 ORTHO05D010034 6.3e-17 90.9 63 65.1
unitig_578.g16590 Utricularia gibba HOM05D007955 ORTHO05D010034 6.3e-17 90.9 74 60.8
PSO782G1662 Papaver somniferum HOM05D007955 ORTHO05D010034 1.4e-16 89.7 88 53.4
Zm00001eb356110 Zea mays HOM05D007955 ORTHO05D010034 1.4e-16 89.7 62 64.5
Mapoly0510s0001 Marchantia polymorpha HOM05D007955 ORTHO05D010034 2.0e-15 85.9 63 61.9
Sed0016691 Sechium edule HOM05D007955 ORTHO05D010034 2.9e-14 82.0 47 78.7
Cc00_g22060 Coffea canephora HOM05D007955 ORTHO05D010034 7.2e-13 77.4 54 64.8
FAN08G1854 Fragaria x ananassa HOM05D000666 ORTHO05D001431 5.7e-10 67.8 34 82.4
FAN13G0857 Fragaria x ananassa HOM05D000666 ORTHO05D001431 5.7e-10 67.8 34 82.4
CBR_g36554 Chara braunii HOM05D007955 ORTHO05D010034 1.8e-08 62.8 30 83.3


User provided reference genes

Program Settings