Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 2.5e-240 835.1 439 100.0
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 2.3e-214 748.8 397 99.2
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.1e-211 740.0 397 99.0
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 6.0e-210 734.2 397 96.2
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 3.4e-205 718.4 397 94.2
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 4.4e-205 718.0 397 93.7
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 7.5e-205 717.2 397 93.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 9.8e-205 716.8 397 93.2
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 9.8e-205 716.8 397 94.0
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 5.4e-203 711.1 397 92.7
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 7.0e-203 710.7 397 93.5
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 9.2e-203 710.3 397 92.7
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.2e-202 709.9 397 92.2
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 4.6e-202 708.0 397 92.7
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 6.0e-202 707.6 397 92.7
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.0e-201 706.8 397 92.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.9e-201 704.9 397 92.7
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.9e-201 704.9 396 93.7
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 8.6e-201 703.7 397 91.9
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 8.6e-201 703.7 397 92.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.1e-200 703.4 397 91.9
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.9e-200 702.6 397 91.4
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 9.5e-200 700.3 397 91.4
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.2e-199 699.9 397 92.9
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 2.8e-199 698.7 398 91.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.1e-199 697.2 397 91.4
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 8.1e-199 697.2 397 91.4
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 8.1e-199 697.2 397 90.9
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 1.8e-198 696.0 397 91.9
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 1.8e-198 696.0 397 91.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 6.8e-198 694.1 397 90.9
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 6.8e-198 694.1 397 91.2
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 1.5e-197 693.0 397 90.7
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.5e-197 693.0 434 84.8
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 7.5e-197 690.6 397 90.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 7.5e-197 690.6 397 90.9
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.9e-196 688.7 397 90.7
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.7e-196 688.3 397 90.7
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 4.9e-196 688.0 433 84.3
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.1e-195 686.8 397 88.9
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.9e-195 686.0 397 89.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 3.2e-195 685.3 398 89.2
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.2e-195 683.7 397 90.4
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 9.2e-195 683.7 398 88.9
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.2e-194 683.3 420 86.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 2.1e-194 682.6 397 88.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.1e-194 682.6 397 89.7
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 2.7e-194 682.2 397 90.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.5e-194 681.8 398 89.9
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.0e-193 680.2 397 90.7
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.3e-193 679.1 398 88.2
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.3e-193 679.1 396 88.6
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 6.6e-193 677.6 398 89.4
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 8.6e-193 677.2 397 89.7
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.9e-192 676.0 397 89.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 2.5e-192 675.6 396 89.6
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.1e-191 672.5 396 89.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.2e-189 666.8 383 90.6
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.4e-189 665.2 397 87.7
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 5.8e-189 664.5 397 87.9
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.9e-188 661.4 397 87.4
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 6.4e-188 661.0 397 86.4
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 6.4e-188 661.0 397 86.9
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.1e-187 660.2 397 87.2
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 5.4e-187 657.9 397 86.6
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 9.2e-187 657.1 397 86.6
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.6e-186 656.4 397 86.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.1e-186 656.0 473 77.0
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 2.7e-186 655.6 397 86.4
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.7e-186 655.6 397 86.4
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.7e-186 655.6 397 86.4
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.7e-186 655.6 397 86.6
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.6e-186 654.8 397 86.4
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 7.8e-186 654.1 397 86.1
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 7.8e-186 654.1 397 85.1
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.1e-185 651.4 397 86.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.1e-184 650.2 397 84.6
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.9e-184 649.4 398 86.4
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.9e-184 649.4 398 86.4
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 7.3e-184 647.5 383 87.7
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.2e-183 646.7 397 85.9
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.1e-182 643.7 399 86.0
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.0e-182 641.7 409 83.4
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 9.0e-182 640.6 421 81.7
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.4e-181 638.6 425 80.5
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.4e-181 638.3 397 85.1
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 2.2e-180 636.0 369 89.7
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 7.1e-179 630.9 397 83.1
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 2.7e-178 629.0 398 84.2
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 5.3e-174 614.8 340 95.9
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 5.8e-173 611.3 346 92.5
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.4e-166 589.3 380 83.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 4.9e-164 581.6 365 85.8
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 7.1e-163 577.8 397 74.3
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.1e-162 576.2 346 88.7
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 1.0e-161 573.9 346 87.6
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 1.0e-161 573.9 346 87.6
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.5e-160 570.1 361 85.0
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 9.6e-160 567.4 324 93.2
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 3.8e-156 555.4 389 78.1
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.3e-153 546.2 351 82.6
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 8.8e-145 517.7 401 68.3
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 3.1e-142 509.2 400 64.0
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 6.1e-138 495.0 280 91.1
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.1e-137 491.9 308 86.7
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.1e-136 490.7 301 84.4
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.3e-132 477.2 302 84.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.7e-132 476.9 397 67.0
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 8.5e-132 474.6 324 80.2
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.1e-114 416.8 246 89.4
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 8.6e-108 394.8 240 83.8
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.3e-100 370.2 293 69.3
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 3.9e-92 342.8 312 64.7
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.1e-82 308.5 302 57.0
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.6e-72 276.9 294 54.8
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.2e-69 268.1 160 90.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 5.8e-64 249.2 439 37.4
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 6.6e-60 235.7 140 90.7
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 3.6e-58 229.9 195 69.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 2.9e-55 220.3 119 98.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 4.9e-55 219.5 120 93.3
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.1e-51 208.4 110 89.1
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.2e-48 198.4 101 92.1
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 4.5e-48 196.4 332 38.0
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.3e-47 194.9 138 61.6
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.8e-47 193.4 111 92.8
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.3e-44 184.9 125 81.6
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 8.7e-44 182.2 111 87.4
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 1.4e-41 174.9 431 31.8
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.0e-39 168.7 91 94.5
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.7e-32 142.5 76 92.1
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.4e-28 131.7 74 89.2
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.8e-28 131.3 81 85.2
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 2.6e-24 117.5 99 66.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 1.4e-22 111.7 57 89.5
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 7.9e-21 105.9 57 86.0
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 3.8e-15 87.0 52 86.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.9e-14 84.7 55 81.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 9.4e-14 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 9.4e-14 82.4 52 86.5
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 2.1e-13 81.3 74 60.8
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.6e-13 80.5 44 93.2
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.4e-09 67.8 35 80.0
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 2.4e-09 67.8 33 84.8
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 3.8e-07 60.5 33 93.9


User provided reference genes

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