Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 5.3e-113 411.0 201 100.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 3.1e-28 129.4 199 39.7
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 4.0e-28 129.0 199 39.7
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 1.4e-25 120.6 199 38.2
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.6e-21 105.9 197 36.0
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.7e-21 105.5 203 35.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 8.1e-21 104.8 191 34.6
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.8e-20 103.6 199 33.7
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 3.1e-20 102.8 199 33.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 3.1e-20 102.8 199 33.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 5.3e-20 102.1 199 34.2
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 6.9e-20 101.7 196 33.2
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 6.9e-20 101.7 199 33.2
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 9.0e-20 101.3 199 33.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.2e-19 100.9 198 32.3
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.2e-19 100.9 198 32.3
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.0e-19 100.1 199 34.7
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.0e-19 100.1 195 34.4
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.6e-19 99.8 186 33.3
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.4e-19 99.4 194 33.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.4e-19 99.4 194 33.5
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 3.4e-19 99.4 199 33.2
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 4.4e-19 99.0 201 33.3
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 4.4e-19 99.0 199 33.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 7.6e-19 98.2 195 33.3
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.6e-19 98.2 199 32.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 7.6e-19 98.2 188 33.5
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 9.9e-19 97.8 200 33.5
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 9.9e-19 97.8 191 34.0
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.3e-18 97.4 199 33.7
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.3e-18 97.4 199 32.7
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.7e-18 97.1 199 32.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.7e-18 97.1 189 32.8
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.7e-18 97.1 189 32.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.9e-18 96.3 185 32.4
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.8e-18 95.9 189 32.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 4.9e-18 95.5 188 33.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 6.4e-18 95.1 199 32.2
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 6.4e-18 95.1 184 32.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 8.4e-18 94.7 189 32.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 8.4e-18 94.7 191 32.5
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.1e-17 94.4 198 33.3
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.4e-17 94.0 189 32.3
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 1.9e-17 93.6 187 31.6
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.9e-17 93.6 189 32.3
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.4e-17 93.2 191 32.5
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.4e-17 93.2 186 31.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.4e-17 93.2 200 32.0
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 2.4e-17 93.2 189 31.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.2e-17 92.8 191 32.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 3.2e-17 92.8 199 32.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.2e-17 92.8 194 32.5
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 3.2e-17 92.8 186 31.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 3.2e-17 92.8 186 31.7
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 4.2e-17 92.4 199 32.7
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 4.2e-17 92.4 196 30.1
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 5.4e-17 92.0 184 32.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.1e-17 91.7 186 31.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 9.3e-17 91.3 184 31.5
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.2e-16 90.9 189 31.7
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.2e-16 90.9 199 32.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.2e-16 90.9 187 32.1
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.1e-16 90.1 198 30.3
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 2.7e-16 89.7 189 31.7
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.7e-16 89.7 189 31.2
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 6.0e-16 88.6 189 30.7
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 6.0e-16 88.6 185 30.8
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 7.8e-16 88.2 189 31.7
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.0e-15 87.8 194 31.4
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 2.3e-15 86.7 199 29.6
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.3e-15 86.7 186 30.6
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 3.0e-15 86.3 191 30.9
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.0e-15 86.3 187 30.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 5.1e-15 85.5 186 30.1
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 8.7e-15 84.7 199 31.2
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.5e-14 84.0 186 29.0
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.9e-14 83.6 199 31.2
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.5e-14 83.2 196 29.1
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.3e-14 82.8 199 30.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 9.6e-14 81.3 36 91.7
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 1.3e-13 80.9 52 69.2
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.1e-12 77.8 36 88.9
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.1e-12 77.8 191 27.7
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 3.1e-12 76.3 62 58.1
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 6.9e-12 75.1 50 68.0
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.2e-11 74.3 35 85.7
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 2.0e-11 73.6 35 85.7
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 9.9e-11 71.2 40 75.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 2.2e-10 70.1 43 67.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 4.9e-10 68.9 36 75.0
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.2e-09 65.9 36 72.2
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 5.4e-09 65.5 51 58.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.1e-08 63.5 59 55.9
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 4.3e-06 55.8 26 88.5


User provided reference genes

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