Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.1e-166 589.0 302 100.0
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 2.0e-95 353.2 231 81.0
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 9.1e-93 344.4 219 81.3
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 5.4e-77 292.0 219 68.5
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 6.6e-59 231.9 224 54.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.9e-58 230.3 230 53.9
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 7.3e-58 228.4 220 54.1
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 6.2e-57 225.3 229 52.0
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 3.1e-56 223.0 227 51.5
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 3.1e-56 223.0 227 51.5
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 5.2e-56 222.2 229 51.1
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.5e-55 220.7 226 51.3
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.5e-55 220.7 230 50.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 2.0e-55 220.3 214 54.2
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.4e-55 219.5 230 50.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 2.9e-54 216.5 223 48.9
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.4e-53 214.2 222 50.9
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.4e-53 214.2 218 52.8
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.4e-53 213.4 222 50.9
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 3.2e-53 213.0 220 49.5
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.6e-52 210.7 222 52.3
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.3e-51 207.6 214 51.4
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 3.9e-51 206.1 221 48.4
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 8.6e-51 204.9 218 52.3
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.5e-50 204.1 221 47.5
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.5e-50 203.4 227 47.1
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 4.3e-50 202.6 229 49.3
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.2e-49 201.1 218 51.4
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.2e-49 201.1 220 46.8
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.6e-49 200.7 218 50.9
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.6e-49 200.7 231 49.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 4.7e-49 199.1 222 48.2
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 6.2e-49 198.7 220 48.6
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 8.1e-49 198.4 224 46.9
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.1e-48 198.0 230 47.8
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.8e-48 197.2 223 48.4
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.8e-48 197.2 223 48.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.8e-48 197.2 221 47.1
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 4.0e-48 196.1 217 49.8
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 5.2e-48 195.7 223 48.9
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 5.2e-48 195.7 223 48.9
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.2e-47 194.5 221 44.8
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.2e-47 194.5 220 48.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.6e-47 193.4 227 46.7
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 3.4e-47 193.0 220 46.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 3.4e-47 193.0 216 50.9
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 4.4e-47 192.6 227 47.1
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.9e-46 189.1 219 47.5
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.9e-46 189.1 226 43.8
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.4e-46 188.7 234 44.0
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-45 188.0 215 47.9
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.9e-45 187.2 215 46.0
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 2.4e-45 186.8 219 43.4
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.2e-45 186.0 222 45.9
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.4e-45 185.7 226 42.9
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 5.4e-45 185.7 213 43.7
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 7.1e-45 185.3 253 44.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.6e-44 184.1 224 44.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.6e-44 184.1 218 44.0
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.1e-44 183.7 209 45.0
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.7e-44 183.3 223 46.2
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 3.5e-44 183.0 224 46.0
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.0e-43 181.4 226 46.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.7e-43 180.6 222 45.5
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.0e-43 179.9 204 50.5
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 3.0e-43 179.9 225 43.1
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 3.0e-43 179.9 211 44.5
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 6.6e-43 178.7 211 44.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-42 177.9 216 46.8
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.1e-42 177.9 229 44.1
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 1.5e-42 177.6 222 42.3
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 5.6e-42 175.6 227 43.6
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.3e-42 175.3 253 40.7
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.8e-41 172.6 244 41.0
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.1e-40 171.4 229 44.5
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 3.1e-40 169.9 208 45.7
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.2e-39 167.9 207 44.0
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.0e-39 167.2 221 43.4
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.3e-38 164.5 224 40.2
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.2e-38 163.7 207 44.4
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.2e-38 163.7 239 39.3
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.8e-38 162.9 224 43.8
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 4.9e-38 162.5 204 42.6
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 6.4e-38 162.2 214 45.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.4e-37 160.2 220 38.2
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 3.2e-37 159.8 202 47.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 5.4e-37 159.1 219 43.4
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.2e-36 157.9 219 40.2
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 2.1e-36 157.1 206 45.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.1e-36 157.1 218 38.5
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 3.5e-36 156.4 241 37.8
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 4.6e-36 156.0 208 42.8
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.3e-35 154.5 248 39.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.6e-35 152.1 208 42.8
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.9e-34 150.6 197 43.1
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 9.6e-34 148.3 217 40.1
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 9.6e-34 148.3 217 40.1
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.3e-33 147.9 205 41.0
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.3e-33 147.9 213 39.9
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 6.2e-33 145.6 195 40.0
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.8e-32 144.1 240 38.3
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.8e-32 144.1 200 42.5
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.4e-32 143.7 247 38.1
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 3.1e-32 143.3 216 37.5
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 4.0e-32 142.9 217 37.3
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 9.0e-32 141.7 223 40.4
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.2e-31 141.4 240 35.8
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.5e-31 141.0 200 41.5
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 9.9e-31 138.3 111 60.4
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.7e-30 137.5 171 41.5
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 2.2e-30 137.1 152 46.7
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.9e-30 136.7 215 39.5
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.9e-30 136.7 209 36.8
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.8e-30 136.3 216 36.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 4.9e-30 136.0 246 33.7
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.5e-29 132.5 215 37.2
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 5.5e-29 132.5 181 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 9.3e-29 131.7 208 36.5
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 4.6e-28 129.4 237 38.0
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.4e-26 122.1 223 35.9
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 4.8e-25 119.4 135 45.9
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.2e-25 119.0 180 38.3
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.1e-24 118.2 204 37.3
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.0e-24 115.2 229 36.2
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.1e-21 108.2 221 30.8
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.2e-21 106.7 123 46.3
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 5.1e-19 99.4 176 37.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.1e-17 94.0 65 67.7
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 2.4e-16 90.5 84 52.4
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 3.1e-16 90.1 85 48.2
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.1e-16 89.7 74 56.8
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 7.6e-15 85.5 62 64.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.0e-14 85.1 172 29.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-14 84.3 56 69.6
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-14 84.3 56 69.6
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 3.8e-14 83.2 113 43.4
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.5e-14 82.4 229 29.3
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 5.5e-13 79.3 122 39.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.6e-12 77.8 129 37.2
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.3e-11 73.9 110 39.1
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.6e-09 67.8 79 41.8
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 2.2e-09 67.4 101 35.6
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.7e-09 66.6 127 37.0
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 6.3e-09 65.9 89 37.1
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.9e-08 62.4 209 24.9


User provided reference genes

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