Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.7e-103 378.6 189 100.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.2e-95 353.2 189 92.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.3e-94 349.0 191 92.1
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 8.2e-92 340.5 190 88.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.4e-85 318.5 189 79.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 9.8e-85 317.0 186 81.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 9.8e-85 317.0 189 82.5
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-82 309.7 187 79.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.5e-82 308.1 189 78.3
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.9e-82 307.8 189 77.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.9e-82 307.8 174 83.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.0e-81 307.0 187 79.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.9e-81 305.4 188 76.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.8e-81 305.1 188 78.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 6.6e-81 304.3 196 75.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.6e-81 304.3 189 76.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 8.6e-81 303.9 186 79.0
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.6e-81 303.9 196 75.5
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-80 303.5 190 76.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.9e-80 302.8 188 77.1
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.5e-80 302.4 189 78.8
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.3e-80 302.0 188 76.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.3e-80 302.0 188 78.2
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.6e-79 299.7 189 76.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.1e-79 299.3 187 77.0
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.6e-79 298.5 186 73.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 4.7e-79 298.1 188 74.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.0e-78 297.0 176 79.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.4e-78 296.6 186 76.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-78 296.2 186 76.9
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.3e-78 295.8 173 82.1
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.5e-77 293.1 186 76.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.0e-77 292.7 173 80.9
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.4e-77 292.0 186 77.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 4.4e-77 291.6 186 76.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 7.5e-77 290.8 186 75.8
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.5e-77 290.8 186 75.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 9.8e-77 290.4 186 75.8
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.3e-76 290.0 186 75.8
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.7e-76 289.7 183 74.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.2e-76 289.3 190 74.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.2e-76 289.3 175 78.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.2e-76 289.3 174 78.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.8e-76 288.9 186 72.6
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.8e-76 288.9 186 75.3
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.3e-76 287.7 186 75.3
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.4e-75 286.6 173 79.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.8e-75 286.2 186 74.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.8e-75 286.2 174 80.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.4e-75 285.8 173 78.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.1e-75 285.4 186 73.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.0e-75 284.3 172 78.5
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 9.2e-75 283.9 186 73.7
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.2e-75 283.9 163 82.2
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.5e-74 281.6 172 79.7
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.5e-74 281.6 174 77.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.5e-74 281.6 173 78.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 5.9e-74 281.2 184 73.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 7.8e-74 280.8 182 74.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-73 280.0 173 77.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.3e-73 280.0 173 77.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.3e-73 280.0 185 72.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 2.3e-73 279.3 173 76.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-73 278.9 173 75.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.8e-73 278.5 182 73.6
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 5.0e-73 278.1 185 73.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.0e-73 278.1 184 73.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.0e-73 278.1 183 72.1
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.6e-73 277.3 185 71.4
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-72 276.9 158 84.2
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.1e-72 276.9 188 70.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.9e-72 276.2 183 72.7
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.3e-72 275.4 173 76.9
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 5.6e-72 274.6 173 73.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.6e-71 273.1 173 72.8
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.8e-71 272.3 185 68.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.7e-71 271.6 170 77.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.7e-71 271.6 164 77.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 8.0e-71 270.8 169 75.1
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 8.0e-71 270.8 187 72.7
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 8.0e-71 270.8 180 71.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.0e-71 270.8 185 68.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.4e-70 270.0 185 68.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.4e-70 270.0 185 68.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-70 269.2 185 68.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.1e-70 268.9 173 71.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.0e-70 268.5 175 69.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.2e-70 268.1 156 81.4
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 6.8e-70 267.7 163 78.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.0e-69 266.2 163 76.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.6e-69 265.8 171 73.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.3e-68 263.5 187 69.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.2e-68 262.7 168 75.0
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.9e-68 262.3 162 75.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.9e-68 262.3 184 62.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.4e-67 259.2 160 76.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.4e-67 259.2 173 73.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 7.0e-67 257.7 160 76.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.5e-66 255.4 158 74.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.6e-66 255.0 170 69.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 7.8e-66 254.2 165 73.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 7.8e-66 254.2 165 73.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.0e-65 253.8 172 72.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.0e-65 253.8 176 71.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-65 253.4 162 74.1
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 5.0e-65 251.5 160 75.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-64 250.4 160 75.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.5e-64 250.0 173 65.9
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.5e-64 249.2 170 68.8
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.5e-64 249.2 170 72.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 4.3e-64 248.4 160 73.8
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.3e-64 247.7 157 74.5
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 7.3e-64 247.7 170 69.4
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 9.5e-64 247.3 160 71.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.5e-64 247.3 160 73.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 9.5e-64 247.3 171 71.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-63 246.9 160 72.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.1e-63 246.1 170 68.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.6e-63 245.4 159 71.7
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.3e-62 242.7 170 69.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.0e-62 241.9 170 65.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.8e-62 241.1 168 68.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 8.9e-62 240.7 170 67.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.8e-61 238.0 160 71.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.3e-60 236.9 170 65.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.7e-60 235.3 170 66.5
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.9e-60 235.0 159 66.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 8.3e-60 234.2 134 79.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.4e-59 233.4 171 64.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 7.0e-59 231.1 161 70.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.0e-59 231.1 161 70.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.2e-58 230.3 134 78.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.7e-58 229.2 161 70.2
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.7e-58 229.2 161 70.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.6e-58 228.4 175 65.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-55 220.3 159 66.0
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.6e-55 218.8 175 64.0
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.6e-55 218.8 163 63.8
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.2e-55 218.0 185 57.8
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.1e-54 217.2 161 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.3e-54 216.1 160 61.9
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.4e-53 212.2 150 65.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.9e-52 209.1 157 62.4
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 6.4e-52 208.0 175 61.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 8.3e-52 207.6 160 61.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.3e-52 207.6 129 79.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.4e-51 206.8 162 64.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.4e-51 206.1 162 58.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 9.2e-51 204.1 155 64.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.3e-49 199.5 160 61.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.0e-49 199.1 163 57.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.9e-48 196.4 125 76.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.3e-48 195.7 188 55.3
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.3e-48 195.3 129 75.2
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.5e-48 194.1 159 61.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.8e-46 188.0 132 68.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.5e-45 186.8 164 61.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.8e-45 184.9 125 72.0
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.9e-45 184.1 179 56.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.7e-44 183.3 169 55.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.9e-44 181.8 179 55.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.4e-43 179.5 142 56.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.6e-40 167.5 116 74.1
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-36 156.0 97 75.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.2e-34 150.6 90 78.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.9e-32 143.3 94 67.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.9e-32 143.3 91 71.4
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.3e-30 135.2 89 73.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-29 134.0 148 43.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.6e-29 132.9 172 45.9
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.4e-27 127.1 73 78.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.5e-18 95.9 79 57.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.6e-18 95.5 69 69.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-13 80.9 69 58.0
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.3e-12 77.4 106 45.3
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.1e-11 74.3 176 31.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-09 67.0 36 77.8
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 2.5e-08 63.2 80 42.5
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 3.3e-08 62.8 36 72.2
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.2e-07 60.1 32 81.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 4.8e-07 58.9 172 30.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 2.4e-06 56.6 32 78.1
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 3.1e-06 56.2 61 39.3
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 6.9e-06 55.1 36 63.9
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 6.9e-06 55.1 32 75.0


User provided reference genes

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