Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G014580 Citrullus lanatus HOM05D001750 ORTHO05D001825 1.2e-135 486.5 237 100.0
ClCG09G014590 Citrullus lanatus HOM05D001750 ORTHO05D001825 2.2e-97 359.4 177 98.3
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.4e-48 197.2 116 86.2
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.4e-48 197.2 116 86.2
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 7.0e-48 194.9 116 86.2
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.0e-47 193.4 116 85.3
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 84.5
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 84.5
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 3.5e-47 192.6 116 85.3
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 5.9e-47 191.8 116 84.5
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 5.9e-47 191.8 116 84.5
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.7e-46 190.3 116 84.5
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 2.3e-46 189.9 116 84.5
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 2.9e-46 189.5 116 83.6
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 2.9e-46 189.5 116 83.6
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 2.9e-46 189.5 116 83.6
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 5.0e-46 188.7 116 82.8
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.0e-46 188.7 116 82.8
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.0e-46 188.7 116 82.8
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.0e-46 188.7 116 82.8
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.0e-46 188.7 116 82.8
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 8.6e-46 188.0 116 83.6
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 8.6e-46 188.0 116 83.6
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 8.6e-46 188.0 116 82.8
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 8.6e-46 188.0 116 82.8
Actinidia34923 Actinidia chinensis HOM05D001750 ORTHO05D001825 1.5e-45 187.2 116 83.6
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.5e-45 187.2 116 83.6
Lj2A1235G104 Lonicera japonica HOM05D001750 ORTHO05D001825 2.5e-45 186.4 116 83.6
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 2.5e-45 186.4 116 83.6
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 2.5e-45 186.4 116 81.0
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 81.9
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 81.9
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 81.9
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 84.5
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 84.5
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 84.5
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 4.3e-45 185.7 116 84.5
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 1.2e-44 184.1 116 82.8
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 6.1e-44 181.8 116 80.2
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-44 181.8 116 81.9
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-43 181.0 117 83.8
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 3.1e-43 179.5 116 81.0
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 1.2e-42 177.6 116 81.9
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 1.5e-42 177.2 117 78.6
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.0e-42 176.8 116 81.9
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.5e-42 174.9 116 77.6
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.3e-41 174.1 116 77.6
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.3e-41 174.1 116 77.6
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.3e-41 174.1 116 79.3
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.3e-41 174.1 116 79.3
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.3e-41 174.1 116 79.3
Nitab4.5_0001152g0250 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.9e-41 172.9 113 79.6
Peaxi162Scf00111g00125 Petunia axillaris HOM05D000478 ORTHO05D000345 3.7e-41 172.6 116 77.6
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 3.7e-41 172.6 116 76.7
ECA234G2654 Erigeron canadensis HOM05D001750 ORTHO05D001825 8.3e-41 171.4 116 77.6
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-38 164.1 116 75.0
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.3e-38 163.3 108 77.8
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 5.6e-37 158.7 119 73.9
Sopen00g005750 Solanum pennellii HOM05D001750 ORTHO05D001825 2.8e-36 156.4 90 84.4
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-33 147.5 116 69.0
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 1.6e-31 140.6 138 60.1
Ah.02g118860 Amaranthus hybridus HOM05D001750 ORTHO05D001825 1.0e-30 137.9 79 83.5
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 6.6e-30 135.2 85 82.4
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.9e-29 133.7 73 87.7
Lsat_1_v5_gn_4_66441 Lactuca sativa HOM05D001750 ORTHO05D001825 8.1e-28 128.3 85 80.0
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-26 124.4 141 53.2
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.9e-26 121.3 85 76.5
PGSC0003DMG400029023 Solanum tuberosum HOM05D001750 ORTHO05D001825 3.7e-25 119.4 85 76.5
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 4.6e-23 112.5 116 56.0
Psat7g150640 Pisum sativum HOM05D001750 ORTHO05D001825 1.3e-22 110.9 70 80.0
Lalb_Chr02g0153701 Lupinus albus HOM05D001750 ORTHO05D001825 3.6e-20 102.8 55 87.3
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 3.6e-20 102.8 149 41.6
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 7.6e-18 95.1 62 77.4
Nitab4.5_0000820g0020 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-16 90.9 66 69.7
QL06p024879 Quercus lobata HOM05D001750 ORTHO05D001825 7.1e-16 88.6 62 72.6
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 7.8e-15 85.1 63 69.8
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 1.3e-14 84.3 82 53.7
COL.COLO4_19867 Corchorus olitorius HOM05D001750 ORTHO05D001825 2.3e-14 83.6 49 83.7
SHI35586 Sapria himalayana HOM05D001750 ORTHO05D001825 4.3e-13 79.3 45 88.9
Atru.chr9.151 Acer truncatum HOM05D001750 ORTHO05D001825 9.6e-13 78.2 52 80.8
CSS0000875 Camellia sinensis var. sinensis HOM05D001750 ORTHO05D001825 1.6e-12 77.4 85 57.6
SHI09894 Sapria himalayana HOM05D001750 ORTHO05D001825 2.1e-12 77.0 86 53.5
MD13G1126900 Malus domestica HOM05D001750 ORTHO05D001825 4.8e-12 75.9 52 78.8
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 2.0e-10 70.5 72 50.0
Lalb_Chr02g0153711 Lupinus albus HOM05D001750 ORTHO05D001825 3.4e-10 69.7 52 75.0
Nitab4.5_0000085g0160 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.4e-10 69.7 52 75.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 5.8e-10 68.9 59 54.2
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 5.8e-10 68.9 59 54.2
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 5.8e-10 68.9 59 54.2
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 5.8e-10 68.9 59 54.2
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 7.6e-10 68.6 84 44.0
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 109 42.2
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 9.9e-10 68.2 59 55.9
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 1.3e-09 67.8 59 55.9
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 1.3e-09 67.8 69 50.7
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.7e-09 67.4 85 42.4
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.7e-09 67.4 59 54.2
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.2e-09 67.0 96 41.7
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 81 45.7
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.9e-09 66.6 59 54.2
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.9e-09 66.6 59 54.2
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.9e-09 66.6 59 54.2
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 2.9e-09 66.6 85 48.2
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.8e-09 66.2 109 36.7
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 3.8e-09 66.2 59 52.5
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 52.5
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 54.2
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 52.5
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 52.5
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 52.5
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 4.9e-09 65.9 79 46.8
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 54.2
PGSC0003DMG400000928 Solanum tuberosum HOM05D001750 ORTHO05D001825 4.9e-09 65.9 52 71.2
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 4.9e-09 65.9 59 52.5
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 6.4e-09 65.5 79 45.6
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
Nitab4.5_0000085g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 55 61.8
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 6.4e-09 65.5 59 54.2
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 8.4e-09 65.1 66 51.5
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.1e-08 64.7 79 45.6
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-08 64.7 59 52.5
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-08 64.7 59 52.5
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.1e-08 64.7 59 52.5
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 1.4e-08 64.3 58 53.4
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 2.4e-08 63.5 86 43.0
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.2e-08 63.2 79 44.3
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-08 63.2 59 52.5
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 3.2e-08 63.2 59 49.2
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 5.4e-08 62.4 59 50.8
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 5.4e-08 62.4 58 51.7
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 7.1e-08 62.0 59 50.8
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 1.6e-07 60.8 105 41.0
Mapoly0015s0004 Marchantia polymorpha HOM05D001750 ORTHO05D001825 2.1e-07 60.5 38 68.4
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.7e-07 60.1 67 46.3
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 2.7e-07 60.1 60 50.0
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.7e-07 60.1 73 42.5
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.7e-07 60.1 69 44.9
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 4.6e-07 59.3 69 44.9
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 6.0e-07 58.9 37 83.8
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 6.0e-07 58.9 69 44.9
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.9e-07 58.5 98 39.8
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 1.7e-06 57.4 59 50.8
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 1.7e-06 57.4 59 50.8
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 1.7e-06 57.4 59 50.8
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 3.0e-06 56.6 42 69.0
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 6.6e-06 55.5 65 47.7
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 6.6e-06 55.5 58 51.7


User provided reference genes

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