Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G014560 Citrullus lanatus HOM05D007736 ORTHO05D009783 1.3e-285 985.7 513 100.0
MELO3C028798.2 Cucumis melo HOM05D007736 ORTHO05D009783 1.3e-259 899.4 524 89.9
CsaV3_7G022310 Cucumis sativus L. HOM05D007736 ORTHO05D009783 4.9e-256 887.5 523 89.1
Sed0025125 Sechium edule HOM05D007736 ORTHO05D009783 8.5e-208 727.2 531 75.3
Sed0013332 Sechium edule HOM05D007736 ORTHO05D009783 3.2e-191 672.2 515 72.0
CiPaw.05G040000 Carya illinoinensis HOM05D007736 ORTHO05D009783 4.4e-79 299.7 396 46.5
TWI14G1332 Tripterygium wilfordii HOM05D007736 ORTHO05D009783 5.4e-69 266.2 423 42.6
Cfa021836 Carpinus fangiana HOM05D007736 ORTHO05D009783 7.0e-69 265.8 419 42.2
Haze_10792 Corylus avellana HOM05D007736 ORTHO05D009783 2.0e-68 264.2 419 41.8
Cpa.g.sc2.48 Carica papaya HOM05D007736 ORTHO05D009783 5.2e-64 249.6 419 41.3
Eucgr.I02697 Eucalyptus grandis HOM05D007736 ORTHO05D009783 5.2e-64 249.6 264 52.3
Glyma.15G050700 Glycine max HOM05D007736 ORTHO05D009783 4.1e-61 240.0 402 40.0
Phvul.006G209200 Phaseolus vulgaris HOM05D007736 ORTHO05D009783 4.1e-61 240.0 414 38.6
Dinv19331 Davidia involucrata HOM05D007736 ORTHO05D009783 1.6e-60 238.0 447 39.4
arahy.Tifrunner.gnm1.ann1.40XV2D Arachis hypogaea HOM05D007736 ORTHO05D009783 7.8e-60 235.7 396 38.1
TAR625G1059 Trochodendron aralioides HOM05D007736 ORTHO05D009783 1.3e-59 235.0 499 37.1
COL.COLO4_20877 Corchorus olitorius HOM05D007736 ORTHO05D009783 2.3e-59 234.2 246 50.4
Thecc.02G144400 Theobroma cacao HOM05D007736 ORTHO05D009783 5.0e-59 233.0 466 36.1
Manes.04G057900 Manihot esculenta HOM05D007736 ORTHO05D009783 1.1e-58 231.9 394 37.1
Psat1g218640 Pisum sativum HOM05D007736 ORTHO05D009783 7.3e-58 229.2 428 38.3
Glyma.08G181600 Glycine max HOM05D007736 ORTHO05D009783 2.1e-57 227.6 405 38.8
QL11p018598 Quercus lobata HOM05D007736 ORTHO05D009783 2.8e-57 227.3 300 45.3
arahy.Tifrunner.gnm1.ann1.JZ71MD Arachis hypogaea HOM05D007736 ORTHO05D009783 1.8e-56 224.6 399 36.6
PGR142G3153 Punica granatum HOM05D007736 ORTHO05D009783 2.3e-56 224.2 421 37.1
VMungo0540G1970 Vigna mungo HOM05D007736 ORTHO05D009783 3.1e-56 223.8 402 36.6
Lj6g0003665 Lotus japonicus HOM05D007736 ORTHO05D009783 3.4e-55 220.3 501 33.5
Medtr2g008130 Medicago truncatula HOM05D007736 ORTHO05D009783 4.4e-55 219.9 270 46.3
Ca_00110_v3 Cicer arietinum L. HOM05D007736 ORTHO05D009783 9.8e-55 218.8 433 36.5
Potri.015G008200 Populus trichocarpa HOM05D007736 ORTHO05D009783 2.9e-54 217.2 336 41.4
Dinv24237 Davidia involucrata HOM05D007736 ORTHO05D009783 8.3e-54 215.7 317 40.7
Potri.012G020400 Populus trichocarpa HOM05D007736 ORTHO05D009783 2.4e-53 214.2 433 35.6
Sabra15G0006300 Salix brachista HOM05D007736 ORTHO05D009783 2.4e-53 214.2 392 38.0
Lj5P244T47 Lonicera japonica HOM05D007736 ORTHO05D009783 1.2e-52 211.8 419 37.9
Cc02_g21990 Coffea canephora HOM05D007736 ORTHO05D009783 2.3e-51 207.6 247 47.4
Actinidia38961 Actinidia chinensis HOM05D007736 ORTHO05D009783 3.0e-51 207.2 341 38.4
Sabra12G0012700 Salix brachista HOM05D007736 ORTHO05D009783 1.6e-49 201.4 391 36.3
vmacro01801 Vaccinium macrocarpon HOM05D007736 ORTHO05D009783 5.8e-47 193.0 446 33.6
Rhsim11G0133400 Rhododendron simsii HOM05D007736 ORTHO05D009783 2.2e-46 191.0 272 42.6
Sc16g0009620 Simmondsia chinensis HOM05D007736 ORTHO05D009783 9.2e-45 185.7 270 42.6
Hund21796 Selenicereus undatus HOM05D007736 ORTHO05D009783 1.2e-44 185.3 275 43.6
TPR.G19753 Trifolium pratense HOM05D007736 ORTHO05D009783 4.6e-44 183.3 244 45.1
Ciclev10028677m.g Citrus clementina HOM05D007736 ORTHO05D009783 6.0e-44 183.0 259 41.7
Lalb_Chr20g0123201 Lupinus albus HOM05D007736 ORTHO05D009783 4.3e-42 176.8 442 32.4
EL10Ac4g09677 Beta vulgaris HOM05D007736 ORTHO05D009783 6.2e-41 172.9 252 41.3
Nitab4.5_0000249g0440 Nicotiana tabacum HOM05D007736 ORTHO05D009783 1.1e-40 172.2 286 38.8
PGSC0003DMG400029771 Solanum tuberosum HOM05D007736 ORTHO05D009783 5.2e-40 169.9 245 41.6
Solyc01g104790.4 Solanum lycopersicum HOM05D007736 ORTHO05D009783 7.6e-39 166.0 243 41.2
Sopen01g047310 Solanum pennellii HOM05D007736 ORTHO05D009783 1.7e-38 164.9 243 41.6
Nitab4.5_0014357g0010 Nicotiana tabacum HOM05D007736 ORTHO05D009783 6.4e-38 162.9 293 37.2
DCAR_021830 Daucus carota HOM05D007736 ORTHO05D009783 2.4e-37 161.0 245 38.8
Ah.06g188730 Amaranthus hybridus HOM05D007736 ORTHO05D009783 4.1e-37 160.2 278 37.1
Atru.chr6.1122 Acer truncatum HOM05D007736 ORTHO05D009783 5.4e-37 159.8 391 34.0
AUR62006887 Chenopodium quinoa HOM05D007736 ORTHO05D009783 1.6e-36 158.3 249 41.8
AUR62000538 Chenopodium quinoa HOM05D007736 ORTHO05D009783 5.1e-35 153.3 249 40.2
CAN.G523.104 Capsicum annuum HOM05D007736 ORTHO05D009783 1.9e-34 151.4 255 37.3
MD04G1236600 Malus domestica HOM05D007736 ORTHO05D009783 1.9e-34 151.4 130 56.9
Prupe.6G356600 Prunus persica HOM05D007736 ORTHO05D009783 9.6e-34 149.1 412 32.0
MD12G1255900 Malus domestica HOM05D007736 ORTHO05D009783 2.8e-33 147.5 129 55.0
Prupe.7G056800 Prunus persica HOM05D007736 ORTHO05D009783 2.8e-33 147.5 407 31.4
MSTRG.27826 Avicennia marina HOM05D007736 ORTHO05D009783 4.7e-33 146.7 258 36.0
Lsat_1_v5_gn_5_106541 Lactuca sativa HOM05D007736 ORTHO05D009783 1.8e-32 144.8 240 37.5
HanXRQChr16g0514111 Helianthus annuus HOM05D007736 ORTHO05D009783 1.2e-31 142.1 239 38.5
FAN09G0667 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.5e-31 141.7 118 57.6
MSTRG.5252 Avicennia marina HOM05D007736 ORTHO05D009783 2.0e-31 141.4 259 35.5
ECA234G2384 Erigeron canadensis HOM05D007736 ORTHO05D009783 2.6e-31 141.0 238 38.7
FvH4_6g01062 Fragaria vesca HOM05D000868 ORTHO05D000711 7.6e-31 139.4 165 50.3
FAN14G5928 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.3e-30 138.7 165 50.3
FAN05G0537 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.7e-30 138.3 162 48.8
Migut.N01016 Erythranthe guttata HOM05D007736 ORTHO05D009783 3.8e-30 137.1 248 34.3
FAN02G1431 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.1e-29 135.6 132 53.0
FAN05G0165 Fragaria x ananassa HOM05D007736 ORTHO05D009783 1.9e-29 134.8 162 48.1
Actinidia00233 Actinidia chinensis HOM05D007736 ORTHO05D009783 9.3e-29 132.5 219 36.1
RcHm_v2.0_Chr3g0448601 Rosa chinensis HOM05D007736 ORTHO05D009783 1.6e-28 131.7 166 45.8
unitig_26.g9583 Utricularia gibba HOM05D007736 ORTHO05D009783 2.7e-28 131.0 118 49.2
Aqoxy4G00650 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 3.9e-27 127.1 328 30.8
Aqoxy5G02135 Aquilegia oxysepala HOM05D007736 ORTHO05D009783 1.9e-26 124.8 407 29.0
Nn1g06123 Nelumbo nucifera HOM05D007736 ORTHO05D009783 5.6e-26 123.2 125 47.2
HanXRQChr10g0289121 Helianthus annuus HOM05D007736 ORTHO05D009783 8.1e-25 119.4 254 34.3
ATR0772G143 Amborella trichopoda HOM05D007736 ORTHO05D009783 1.4e-24 118.6 345 30.1
TAR381G1413 Trochodendron aralioides HOM05D007736 ORTHO05D009783 6.9e-24 116.3 79 62.0
CDE02G1981 Ceratophyllum demersum HOM05D007736 ORTHO05D009783 4.6e-20 103.6 247 33.2
SGA_v2.0_scaffold45G17286 Striga asiatica HOM05D007736 ORTHO05D009783 1.1e-16 92.4 226 34.1
Zm00001eb382360 Zea mays HOM05D007736 ORTHO05D009783 1.6e-12 78.6 238 31.9
Os06g0468400 Oryza sativa ssp. japonica HOM05D007736 ORTHO05D009783 1.3e-11 75.5 238 31.9
Peaxi162Scf01290g00019 Petunia axillaris HOM05D007736 ORTHO05D009783 3.4e-07 60.8 212 29.7
HPP92_001092 Vanilla planifolia HOM05D007736 ORTHO05D009783 2.9e-06 57.8 252 28.2
Oeu012723.3 Olea europaea HOM05D007736 ORTHO05D009783 6.5e-06 56.6 154 31.8


User provided reference genes

Program Settings