Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.6e-191 672.5 332 100.0
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.7e-172 609.4 334 90.7
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 6.0e-154 547.7 334 82.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 6.8e-150 534.3 299 88.6
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.2e-130 470.3 332 69.6
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.7e-130 469.2 334 68.3
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 2.7e-130 469.2 296 74.3
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 3.5e-130 468.8 327 69.7
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.7e-129 464.5 292 73.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.5e-128 462.6 297 73.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.6e-127 459.9 341 66.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 6.2e-127 458.0 337 66.2
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.1e-126 457.2 314 69.4
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.4e-126 456.1 293 71.7
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 4.0e-126 455.3 338 66.6
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 6.9e-126 454.5 343 64.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.4e-125 452.2 300 71.3
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.4e-125 452.2 332 66.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 9.9e-125 450.7 337 68.2
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.3e-124 450.3 315 68.9
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.3e-124 450.3 328 67.7
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.7e-124 449.9 296 71.3
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.8e-124 448.7 331 65.0
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 8.4e-124 447.6 335 63.9
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 8.4e-124 447.6 324 64.5
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-123 447.2 329 64.7
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-123 447.2 329 64.7
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.9e-123 446.4 324 66.7
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.4e-123 446.0 327 65.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 5.5e-123 444.9 299 67.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.1e-122 443.0 335 64.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.7e-122 442.6 299 69.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 3.5e-122 442.2 293 69.6
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.6e-122 441.8 331 65.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 7.9e-122 441.0 304 70.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.3e-121 440.3 333 64.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.8e-121 439.9 292 68.8
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.8e-121 439.9 292 68.8
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.3e-121 439.5 335 64.5
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.3e-121 439.5 314 66.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.3e-121 439.5 298 68.5
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.0e-121 439.1 299 70.2
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-120 436.8 292 70.2
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.9e-120 436.4 297 68.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.3e-120 435.3 328 64.3
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.3e-120 435.3 328 64.3
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.3e-120 435.3 334 63.5
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.3e-119 433.7 334 63.5
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 6.2e-119 431.4 296 68.2
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-118 430.3 292 67.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.4e-118 430.3 292 67.5
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.4e-118 429.5 337 62.9
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.1e-118 429.1 302 66.6
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 5.3e-118 428.3 320 64.1
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 292 67.1
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.3e-118 428.3 293 68.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-117 426.8 301 67.4
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.0e-117 426.4 335 62.4
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.6e-117 426.0 336 61.6
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 6.5e-116 421.4 313 65.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.1e-115 420.6 337 62.0
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.2e-115 419.1 331 63.7
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 3.2e-115 419.1 315 65.7
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.2e-115 419.1 328 62.5
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.5e-115 418.3 325 63.7
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 5.5e-115 418.3 324 64.2
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 7.1e-115 417.9 341 61.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 7.9e-114 414.5 331 61.9
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.8e-113 413.3 314 65.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 3.0e-113 412.5 334 61.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.9e-113 412.1 352 60.5
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 5.1e-113 411.8 302 65.9
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.5e-112 409.5 333 60.4
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 4.3e-112 408.7 344 60.5
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 7.4e-112 407.9 294 65.3
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.3e-111 407.1 338 60.4
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-111 407.1 296 65.5
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-111 407.1 296 65.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.3e-111 407.1 296 65.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.6e-111 406.8 330 62.1
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.6e-111 406.8 304 64.8
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 4.8e-111 405.2 307 64.2
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 4.8e-111 405.2 303 65.0
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 4.8e-111 405.2 328 60.4
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 4.8e-111 405.2 299 63.9
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 8.2e-111 404.4 326 61.3
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 8.2e-111 404.4 304 64.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-110 403.7 327 61.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.4e-110 403.7 327 61.5
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.4e-110 403.7 287 66.2
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.4e-110 402.9 307 63.5
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.1e-110 402.5 300 63.7
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.4e-109 399.1 313 61.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.5e-109 398.7 335 60.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.0e-108 397.5 303 62.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 4.2e-107 392.1 317 60.9
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 7.2e-107 391.3 352 54.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.7e-106 389.4 299 61.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 3.0e-105 386.0 304 61.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 5.1e-105 385.2 296 61.1
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 6.7e-105 384.8 333 55.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.3e-103 380.6 293 60.8
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 6.3e-103 378.3 357 55.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.4e-102 377.1 351 55.3
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.7e-101 371.3 293 61.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-100 369.8 299 62.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.9e-99 366.7 265 64.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.2e-99 365.9 300 57.3
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.9e-97 359.0 338 56.8
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.1e-96 357.5 299 59.5
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.4e-94 350.5 334 54.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.1e-91 340.9 291 57.0
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.6e-90 335.9 292 58.2
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.4e-86 323.9 286 54.2
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 7.7e-85 318.2 272 58.5
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.7e-84 317.0 308 50.6
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-81 307.0 311 53.4
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 4.1e-78 295.8 256 59.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.9e-76 289.7 260 53.1
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.2e-75 286.2 308 51.0
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.3e-71 271.9 196 66.3
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.4e-70 270.0 288 45.8
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.9e-69 265.4 365 39.5
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.4e-65 254.2 295 43.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-64 250.8 198 62.6
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.6e-64 250.0 289 41.2
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 9.8e-64 248.1 287 47.7
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 3.5e-61 239.6 297 41.8
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-59 234.2 159 67.3
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 6.8e-57 225.3 260 42.7
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 2.0e-56 223.8 184 57.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.8e-49 200.7 247 44.5
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.3e-39 167.9 280 36.1
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.3e-36 157.1 119 58.0
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.1e-33 148.3 84 79.8
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.2e-30 136.7 114 57.9
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.6e-29 134.4 99 62.6
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 8.1e-26 122.1 73 76.7
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 4.0e-25 119.8 120 49.2
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 9.0e-25 118.6 114 50.0
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.4e-24 116.7 76 72.4
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.8e-24 115.9 68 76.5
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 9.9e-24 115.2 112 51.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.7e-20 102.1 175 36.0
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 4.3e-19 99.8 96 49.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-18 97.4 102 48.0
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.8e-18 97.1 87 50.6
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.0e-17 93.2 58 77.6
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-16 91.3 60 70.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.0e-16 90.9 77 50.6
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.1e-13 80.9 84 54.8
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.7e-12 75.9 64 53.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-10 71.6 47 68.1
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.5e-06 57.4 57 43.9
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 7.1e-06 55.8 51 47.1


User provided reference genes

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