Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 4.7e-84 315.5 313 100.0
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 3.4e-42 176.4 313 73.5
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.8e-41 172.9 313 73.8
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 4.5e-34 149.4 313 65.2
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.8e-28 130.2 315 55.6
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.4e-27 127.1 313 62.6
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.1e-27 126.7 313 56.2
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 9.0e-27 125.2 313 58.8
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 9.0e-27 125.2 317 54.6
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.7e-25 120.9 315 61.0
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.2e-25 120.6 315 55.9
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 6.5e-25 119.0 315 57.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.1e-24 118.2 315 55.9
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-24 118.2 313 55.9
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.4e-24 117.9 313 46.6
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-23 114.4 315 56.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.3e-22 111.3 313 52.1
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.7e-22 108.6 315 60.0
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.5e-21 107.8 314 57.3
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.6e-20 104.4 159 73.0
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.8e-19 100.9 314 43.9
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.1e-19 100.1 313 57.5
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.1e-19 99.8 313 49.8
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 5.3e-19 99.4 159 70.4
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.0e-18 97.4 312 57.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.6e-18 97.1 313 50.2
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.4e-18 96.7 336 50.0
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.4e-18 96.7 305 40.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.3e-17 94.7 306 54.2
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 6.5e-17 92.4 314 45.5
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 6.5e-17 92.4 158 80.4
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.4e-16 91.3 159 74.2
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 3.2e-16 90.1 313 50.5
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 5.5e-16 89.4 159 75.5
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 7.2e-16 89.0 159 72.3
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 9.4e-16 88.6 313 47.0
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 1.2e-15 88.2 342 41.8
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.6e-15 87.8 317 52.1
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.1e-15 87.4 227 44.5
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.7e-15 87.0 302 52.0
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 3.6e-15 86.7 316 57.0
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 6.1e-15 85.9 315 56.2
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 6.1e-15 85.9 159 74.2
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.9e-15 85.5 129 80.6
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.4e-14 84.7 309 49.5
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 2.3e-14 84.0 316 51.3
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 3.0e-14 83.6 159 69.8
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 3.9e-14 83.2 315 55.9
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.9e-14 83.2 313 51.1
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 5.1e-14 82.8 129 83.7
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.1e-14 82.8 226 43.8
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.1e-13 81.6 159 71.7
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.3e-13 80.1 239 55.6
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.3e-13 79.7 316 45.3
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 4.3e-13 79.7 310 49.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 4.3e-13 79.7 159 69.2
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 7.4e-13 79.0 159 65.4
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 7.4e-13 79.0 318 47.5
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 9.7e-13 78.6 167 61.7
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 9.7e-13 78.6 309 57.0
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 9.7e-13 78.6 159 64.2
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 9.7e-13 78.6 159 64.2
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 9.7e-13 78.6 159 61.0
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.3e-12 78.2 158 63.3
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.3e-12 78.2 159 64.8
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.7e-12 77.8 129 80.6
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.2e-12 77.4 129 82.9
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.8e-12 77.0 317 44.8
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.8e-12 77.0 320 38.8
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 3.7e-12 76.6 130 81.5
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 3.7e-12 76.6 118 89.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 6.3e-12 75.9 152 52.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.1e-11 75.1 159 62.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.4e-11 74.7 130 80.8
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 2.4e-11 73.9 167 56.3
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 2.4e-11 73.9 167 59.3
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 2.4e-11 73.9 167 56.3
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.1e-11 73.6 73 56.2
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.1e-11 73.2 240 56.2
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 5.3e-11 72.8 167 58.7
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 9.1e-11 72.0 129 56.6
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.1e-11 72.0 118 81.4
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.0e-10 70.9 129 79.8
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.0e-10 70.9 73 56.2
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 4.5e-10 69.7 118 88.1
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.5e-10 69.7 118 88.1
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.5e-10 69.7 118 88.1
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.9e-10 69.3 69 60.9
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.0e-09 68.6 159 62.9
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.0e-09 68.6 191 57.1
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.0e-09 68.6 224 34.8
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.7e-09 67.8 69 60.9
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.2e-09 67.4 167 65.9
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.8e-09 66.6 150 55.3
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.8e-09 66.6 129 76.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 5.0e-09 66.2 150 68.7
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 8.5e-09 65.5 134 61.2
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 8.5e-09 65.5 70 52.9
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.5e-09 65.5 316 32.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.1e-08 65.1 148 33.8
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.1e-08 65.1 370 45.9
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 1.4e-08 64.7 157 57.3
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.4e-08 64.7 337 54.0
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-08 64.7 159 69.2
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.9e-08 64.3 143 66.4
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 2.5e-08 63.9 319 43.3
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.5e-08 63.9 117 79.5
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.5e-08 63.9 150 68.0
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 3.2e-08 63.5 70 51.4
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.2e-08 63.5 123 67.5
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.2e-08 63.2 125 69.6
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 5.5e-08 62.8 163 60.7
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 5.5e-08 62.8 70 51.4
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 7.2e-08 62.4 156 52.6
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 9.4e-08 62.0 128 75.8
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.6e-07 61.2 156 57.1
MD08G1229300 Malus domestica HOM05D003347 ORTHO05D003821 1.6e-07 61.2 44 79.5
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.6e-07 61.2 155 63.2
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 1.6e-07 61.2 125 56.0
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.1e-07 60.8 156 55.8
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.1e-07 60.8 315 54.9
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 2.7e-07 60.5 72 48.6
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 2.7e-07 60.5 158 47.5
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 4.7e-07 59.7 70 47.1
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 4.7e-07 59.7 68 50.0
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 6.1e-07 59.3 70 48.6
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.0e-06 58.5 117 80.3
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.8e-06 57.8 73 46.6
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.3e-06 57.4 152 62.5
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 3.9e-06 56.6 131 77.1
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.7e-06 55.8 126 60.3
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 6.7e-06 55.8 72 52.8
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 8.8e-06 55.5 71 54.9


User provided reference genes

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