Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 0.0e+00 1319.3 665 100.0
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 5.7e-289 997.3 544 91.0
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 3.5e-286 988.0 545 90.3
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 8.3e-272 940.3 543 86.2
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 1.5e-225 786.6 503 73.0
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.3e-224 783.5 543 69.6
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.4e-223 779.2 523 71.7
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 2.4e-223 779.2 539 69.8
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.1e-223 777.7 542 68.8
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 1.2e-222 776.9 542 69.0
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 2.7e-222 775.8 521 70.6
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.0e-222 774.6 543 68.3
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 3.0e-221 772.3 537 69.3
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.1e-221 771.5 549 68.3
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 5.1e-221 771.5 544 68.6
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.5e-220 769.2 503 71.8
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 2.8e-219 765.8 521 70.4
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.1e-218 763.8 515 70.9
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.4e-218 762.7 556 67.1
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 4.0e-218 761.9 540 68.5
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 4.5e-217 758.4 520 68.8
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 5.8e-217 758.1 541 66.9
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 6.4e-216 754.6 541 66.4
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 2.4e-215 752.7 500 71.6
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 5.5e-215 751.5 552 66.5
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 7.1e-215 751.1 539 67.3
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 1.3e-213 746.9 504 70.4
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 1.8e-213 746.5 511 69.5
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 1.9e-212 743.0 518 69.1
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 2.5e-212 742.7 514 69.3
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 5.6e-212 741.5 527 69.1
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 2.8e-211 739.2 524 67.0
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 4.8e-211 738.4 509 69.2
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 8.2e-211 737.6 503 69.0
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 4.0e-210 735.3 540 65.6
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 5.3e-210 734.9 524 66.6
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 6.9e-210 734.6 504 68.8
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 9.0e-210 734.2 542 64.6
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.5e-209 733.4 514 68.1
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 7.6e-209 731.1 501 69.7
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.0e-208 730.7 516 67.6
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 2.9e-208 729.2 519 65.7
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 6.5e-208 728.0 544 64.5
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 8.4e-208 727.6 543 65.0
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.9e-207 726.5 536 64.2
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 2.5e-207 726.1 532 64.8
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 5.5e-207 724.9 508 68.5
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 3.5e-206 722.2 510 66.9
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 6.0e-206 721.5 512 66.6
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 2.3e-205 719.5 506 68.6
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.9e-205 718.8 505 68.5
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.3e-204 715.7 510 68.6
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.3e-204 715.7 505 68.3
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 4.3e-204 715.3 503 68.0
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 5.7e-204 714.9 519 66.1
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-203 713.8 505 68.3
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 1.6e-203 713.4 514 65.8
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 1.6e-203 713.4 512 66.2
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 2.4e-202 709.5 509 66.4
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 5.3e-202 708.4 486 69.5
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 1.5e-201 706.8 509 65.8
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.5e-201 706.8 529 63.9
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 5.9e-201 704.9 521 66.2
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 1.0e-200 704.1 525 65.1
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.3e-200 703.7 512 65.0
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 2.2e-200 703.0 508 67.1
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 5.0e-200 701.8 510 66.5
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.9e-199 699.9 521 65.5
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.9e-199 699.9 518 66.8
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 7.2e-199 698.0 522 64.8
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 3.6e-198 695.7 508 66.3
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.0e-197 694.1 486 68.1
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 1.0e-197 694.1 527 64.9
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 6.7e-197 691.4 528 64.8
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.5e-196 690.3 529 64.3
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 1.7e-195 686.8 527 64.1
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 8.2e-195 684.5 496 66.1
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 5.9e-193 678.3 514 65.4
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 1.0e-192 677.6 499 65.3
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 3.2e-191 672.5 478 66.1
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 3.6e-190 669.1 484 67.1
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 4.8e-187 658.7 463 68.7
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 1.1e-186 657.5 497 64.8
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 2.0e-185 653.3 514 61.1
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 5.9e-185 651.7 461 66.2
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 5.9e-185 651.7 538 58.9
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 3.6e-182 642.5 509 62.1
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 4.8e-179 632.1 419 72.8
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.6e-172 609.8 415 70.6
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 6.3e-171 605.1 607 51.7
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 1.4e-170 604.0 504 59.9
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 2.7e-169 599.7 589 53.1
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 1.8e-162 577.0 430 64.4
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 5.9e-161 572.0 567 51.7
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 4.2e-159 565.8 378 70.6
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 6.8e-157 558.5 394 68.3
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.9e-152 543.1 551 49.5
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.9e-152 543.1 551 49.5
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 9.5e-151 538.1 421 62.2
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 3.6e-150 536.2 471 55.0
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 4.0e-149 532.7 438 59.8
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 2.4e-146 523.5 375 65.6
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 8.6e-144 515.0 381 67.7
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 1.2e-140 504.6 347 70.0
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 9.8e-140 501.5 376 63.6
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 8.9e-133 478.4 477 54.3
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 1.5e-132 477.6 503 50.9
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 2.8e-126 456.8 509 51.1
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 3.1e-125 453.4 487 50.9
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 1.1e-119 434.9 284 71.1
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 3.3e-119 433.3 429 52.7
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.1e-85 322.0 446 39.0
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 4.1e-77 293.5 214 67.8
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 1.6e-73 281.6 238 58.0
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 1.9e-66 258.1 189 66.7
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 2.8e-54 217.6 202 56.9
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 1.4e-48 198.7 138 66.7
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.6e-47 194.5 133 66.2
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 7.0e-45 186.4 121 70.2
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 3.8e-43 180.6 173 56.1
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 8.6e-43 179.5 503 29.2
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 4.2e-42 177.2 118 68.6
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 1.3e-38 165.6 110 67.3
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.4e-30 136.7 90 67.8
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 2.3e-27 128.3 133 55.6
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 7.3e-26 123.2 107 55.1
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 7.3e-26 123.2 107 55.1
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 7.3e-26 123.2 107 55.1
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.3e-24 118.2 85 64.7
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 5.4e-21 107.1 75 65.3
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.9e-19 100.9 74 66.2
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 1.2e-09 69.3 306 26.8
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.6e-09 68.9 403 26.8
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.6e-09 68.9 306 27.1
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 2.8e-09 68.2 306 26.8
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 3.6e-09 67.8 315 26.0
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 6.2e-09 67.0 315 26.0
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 6.2e-09 67.0 320 25.0
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 8.1e-09 66.6 318 24.5
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 1.4e-08 65.9 290 25.5
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.4e-08 65.9 306 26.1
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 3.1e-08 64.7 306 26.5
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 3.1e-08 64.7 306 27.1
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 4.0e-08 64.3 371 25.9
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 5.2e-08 63.9 351 27.1
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 8.9e-08 63.2 305 25.9
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 8.9e-08 63.2 306 24.5
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 8.9e-08 63.2 318 24.2
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 1.2e-07 62.8 305 25.9
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 1.2e-07 62.8 305 25.9
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.2e-07 62.8 306 26.5
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 1.5e-07 62.4 315 24.8
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.0e-07 62.0 318 24.2
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 2.6e-07 61.6 306 26.5
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 3.4e-07 61.2 42 59.5
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 4.4e-07 60.8 306 26.5
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 7.6e-07 60.1 313 23.3
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 7.6e-07 60.1 306 25.8
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 1.7e-06 58.9 123 31.7
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.7e-06 58.9 362 24.6
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 2.2e-06 58.5 115 29.6
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 2.9e-06 58.2 233 24.5
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 3.8e-06 57.8 306 24.2
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 3.8e-06 57.8 130 27.7


User provided reference genes

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