Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.3e-157 560.1 370 100.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.1e-140 503.8 378 92.3
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 8.2e-128 461.1 378 87.8
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.7e-120 436.8 252 90.9
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 7.0e-103 378.3 327 75.2
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 2.1e-99 366.7 340 73.2
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 4.7e-99 365.5 329 72.9
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.0e-98 364.4 327 70.3
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.2e-97 360.9 331 69.2
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 5.7e-97 358.6 328 74.7
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 5.7e-97 358.6 332 68.4
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.3e-96 357.5 332 73.5
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.7e-96 357.1 254 73.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.2e-96 356.7 328 71.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.8e-96 356.3 328 73.2
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.4e-95 354.0 327 68.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 3.1e-95 352.8 327 68.8
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 4.1e-95 352.4 335 73.1
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 4.1e-95 352.4 333 68.2
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.2e-94 350.9 333 70.3
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 5.9e-94 348.6 350 68.6
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 5.9e-94 348.6 329 73.3
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 7.7e-94 348.2 328 69.2
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 7.7e-94 348.2 331 73.1
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.0e-93 347.8 336 70.2
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.3e-93 347.4 358 65.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.3e-93 346.7 339 69.6
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.9e-93 346.3 335 70.1
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.0e-93 345.5 348 69.5
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.0e-93 345.5 348 69.5
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 5.0e-93 345.5 328 66.2
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.0e-93 345.5 321 69.8
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.6e-93 344.7 327 72.2
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.1e-92 344.4 329 69.0
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-92 343.6 325 65.8
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.9e-92 343.6 325 65.8
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 3.3e-92 342.8 329 70.5
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.3e-92 342.8 329 67.2
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 7.2e-92 341.7 325 65.8
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 2.1e-91 340.1 325 65.8
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.8e-91 339.7 321 72.6
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.6e-91 339.3 325 65.8
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.6e-91 339.3 331 64.0
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 4.7e-91 339.0 327 64.5
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 8.0e-91 338.2 325 64.9
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.4e-90 337.4 328 64.6
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.8e-90 337.0 323 62.2
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.0e-90 335.9 325 64.9
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 5.2e-90 335.5 325 64.0
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.5e-89 334.0 327 63.0
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 3.4e-89 332.8 327 70.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.4e-89 332.8 370 64.3
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 4.4e-89 332.4 336 68.5
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 7.5e-89 331.6 269 68.4
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.9e-88 329.7 330 60.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.9e-88 329.7 341 63.9
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 3.7e-88 329.3 329 70.2
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 8.3e-88 328.2 328 69.8
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.1e-87 327.8 332 61.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.1e-87 327.8 350 67.4
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.0e-85 321.2 327 60.9
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.0e-85 321.2 327 60.9
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.9e-85 319.3 320 59.4
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.0e-85 318.9 251 67.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.5e-84 317.4 330 58.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.5e-84 316.6 317 57.7
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.5e-84 316.6 333 55.3
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 4.3e-84 315.8 329 67.5
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 9.5e-84 314.7 325 64.3
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-83 313.9 244 70.5
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.8e-83 313.2 331 60.4
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.8e-83 313.2 323 69.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 1.0e-82 311.2 330 60.0
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.4e-82 310.8 323 61.3
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 5.2e-82 308.9 327 59.9
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 8.9e-82 308.1 321 64.2
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.5e-81 307.4 327 64.8
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.6e-81 306.6 318 61.3
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 3.4e-81 306.2 327 56.9
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 9.8e-81 304.7 256 66.4
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.3e-80 304.3 256 63.7
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 8.3e-80 301.6 326 55.5
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.9e-79 300.4 319 59.2
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.4e-79 298.9 337 63.5
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 5.4e-79 298.9 289 58.8
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.5e-78 296.2 325 65.8
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.1e-76 291.2 329 54.7
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 9.5e-76 288.1 257 63.0
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 9.5e-76 288.1 347 54.5
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 6.2e-75 285.4 331 53.2
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.5e-73 280.8 323 52.9
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 7.5e-73 278.5 210 73.8
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 9.8e-73 278.1 211 72.0
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 7.1e-71 271.9 218 67.9
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 6.6e-69 265.4 402 48.0
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.1e-68 264.6 242 61.6
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 4.3e-68 262.7 237 62.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 8.1e-67 258.5 327 50.8
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 8.1e-67 258.5 345 57.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.4e-66 257.7 236 58.5
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.0e-65 253.8 228 64.0
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 2.6e-65 253.4 225 64.0
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.8e-65 252.3 327 51.4
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 9.9e-65 251.5 261 54.4
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.3e-64 251.1 219 66.7
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.2e-64 250.4 330 60.0
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 6.4e-64 248.8 336 54.8
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.2e-62 244.6 249 55.0
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.2e-62 244.6 342 48.8
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.6e-62 244.2 328 52.1
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.7e-62 243.4 336 57.4
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.3e-61 241.1 210 68.6
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.3e-61 240.4 235 57.9
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.1e-61 239.2 325 48.6
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-59 234.6 255 55.7
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.2e-59 234.6 255 55.7
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 4.7e-59 232.6 339 50.7
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 8.9e-58 228.4 185 68.6
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 4.4e-57 226.1 258 54.7
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 4.4e-57 226.1 258 54.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 7.6e-57 225.3 208 63.9
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 9.9e-57 224.9 258 54.7
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.3e-56 224.6 331 49.2
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-53 214.5 251 53.0
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 7.3e-52 208.8 216 70.4
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 2.2e-48 197.2 264 44.3
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 2.4e-39 167.2 152 64.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.9e-38 162.2 102 82.4
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.3e-37 160.6 128 70.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.8e-32 143.3 219 44.7
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.1e-30 137.5 152 44.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 3.3e-28 130.2 147 47.6
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 1.1e-26 125.2 136 44.1
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.9e-26 122.5 209 43.5
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.3e-23 112.1 121 47.1
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.0e-21 108.6 153 37.9
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 5.7e-20 102.8 113 79.6
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.3e-19 101.7 132 40.2
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.6e-19 101.3 120 44.2
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 1.1e-18 98.6 117 80.3
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.0e-17 94.4 122 78.7
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 5.9e-17 92.8 112 54.5
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.1e-15 88.6 103 56.3
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.1e-15 88.6 126 73.8
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 9.4e-15 85.5 145 63.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.5e-12 77.4 53 64.2
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.4e-10 70.9 103 44.7
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.9e-08 63.9 42 71.4


User provided reference genes

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