Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 8.3e-114 413.7 205 100.0
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.9e-82 308.1 174 89.1
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 3.3e-78 295.4 174 86.2
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 2.8e-61 239.2 174 67.2
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 2.8e-61 239.2 174 66.7
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 8.2e-61 237.7 170 68.8
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.1e-60 237.3 191 60.2
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 3.1e-60 235.7 174 69.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 4.1e-60 235.3 173 64.7
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.2e-59 233.8 172 67.4
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.5e-59 233.4 174 66.7
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.5e-59 233.4 174 67.2
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 2.6e-59 232.6 170 67.6
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.9e-59 231.5 184 62.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 1.0e-58 230.7 174 64.4
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.0e-58 230.7 174 66.1
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.9e-58 229.2 172 65.1
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.5e-58 228.0 177 61.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 8.5e-58 227.6 173 65.9
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.4e-57 226.9 174 66.7
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.9e-57 226.5 172 65.1
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.9e-57 226.5 172 63.4
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.2e-57 225.7 172 64.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.2e-57 225.7 174 66.1
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.2e-57 225.7 174 65.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.2e-57 224.6 174 64.9
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 9.3e-57 224.2 170 62.9
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.3e-57 224.2 167 67.7
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-56 223.4 172 64.0
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.6e-56 223.4 169 64.5
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.7e-56 222.6 177 65.5
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.6e-56 221.9 167 66.5
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.3e-55 220.3 170 65.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.3e-55 220.3 167 67.1
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.0e-55 219.2 174 64.9
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 3.0e-55 219.2 171 64.9
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.9e-55 218.8 174 63.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 6.7e-55 218.0 195 56.4
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.7e-55 217.6 155 67.7
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.1e-54 217.2 174 63.2
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.9e-54 216.5 174 63.8
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.5e-54 216.1 170 62.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 5.7e-54 214.9 174 58.6
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 5.7e-54 214.9 174 58.6
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.3e-53 213.8 172 61.6
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.3e-53 213.8 175 61.7
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 2.2e-53 213.0 170 62.4
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 8.2e-53 211.1 174 61.5
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.1e-52 210.7 174 60.3
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.9e-52 208.0 165 61.8
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 9.1e-52 207.6 173 60.7
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-51 206.8 172 60.5
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.0e-51 206.5 165 62.4
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 3.4e-51 205.7 166 63.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.7e-51 204.5 172 61.6
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 1.0e-50 204.1 172 62.2
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 2.9e-50 202.6 172 59.9
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.8e-50 202.2 173 60.1
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.5e-50 201.1 172 59.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.1e-49 200.7 174 57.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.9e-49 199.9 174 60.9
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.2e-49 199.1 149 63.8
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 3.2e-49 199.1 172 59.3
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.5e-49 198.4 177 60.5
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 7.2e-49 198.0 174 57.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.2e-48 197.2 174 56.3
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.6e-48 196.8 174 55.2
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.6e-48 196.8 173 59.0
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.1e-48 196.4 182 57.1
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.1e-48 196.4 165 60.0
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 3.6e-48 195.7 174 55.7
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 6.1e-48 194.9 172 59.3
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.4e-47 193.7 172 61.0
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.8e-47 193.4 172 59.9
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 2.3e-47 193.0 182 56.6
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 3.0e-47 192.6 182 59.9
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.9e-47 192.2 175 57.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 5.1e-47 191.8 183 57.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.1e-47 191.8 163 61.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 6.7e-47 191.4 174 55.2
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 8.8e-47 191.0 182 56.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 8.8e-47 191.0 175 56.6
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.1e-46 190.7 175 56.6
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.5e-46 190.3 172 59.9
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.6e-46 189.5 172 59.3
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 3.3e-46 189.1 172 57.6
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 5.7e-46 188.3 166 60.2
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 5.7e-46 188.3 183 57.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 5.7e-46 188.3 183 57.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 5.7e-46 188.3 171 57.9
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 7.4e-46 188.0 145 64.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 9.7e-46 187.6 175 54.9
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 9.7e-46 187.6 172 54.7
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.3e-45 187.2 175 56.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.7e-45 186.8 174 53.4
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.2e-45 186.4 149 61.7
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.1e-44 184.1 166 59.6
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.4e-44 183.7 152 63.2
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.4e-44 183.0 182 54.9
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 2.4e-44 183.0 174 53.4
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 5.3e-44 181.8 179 57.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.5e-43 180.3 171 55.6
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.0e-43 179.9 169 56.8
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.4e-43 179.1 201 51.2
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 4.5e-43 178.7 208 49.5
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.0e-42 177.6 188 55.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.3e-42 177.2 173 51.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.9e-42 176.0 185 53.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 3.8e-42 175.6 208 48.6
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.8e-42 175.6 171 55.0
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 5.5e-41 171.8 171 53.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 7.2e-41 171.4 145 60.0
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 9.4e-41 171.0 169 55.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.2e-40 170.6 169 55.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 2.1e-40 169.9 166 53.6
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.3e-39 166.4 174 50.6
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 6.7e-39 164.9 175 46.9
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.5e-38 163.7 173 49.7
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.3e-37 160.6 146 57.5
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.7e-37 160.2 173 50.9
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.0e-35 153.3 182 49.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.8e-34 149.1 145 55.2
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.5e-33 147.1 86 93.0
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.2e-33 145.6 111 62.2
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.5e-33 145.2 152 51.3
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.2e-33 144.8 174 48.3
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.3e-29 134.0 109 66.1
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 4.1e-28 129.0 173 41.0
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-27 127.1 81 69.1
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 7.7e-27 124.8 105 60.0
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.5e-25 120.6 109 59.6
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 4.0e-23 112.5 83 63.9
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 3.7e-21 105.9 72 66.7
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 3.5e-19 99.4 93 54.8
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 4.2e-17 92.4 191 33.5
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 7.2e-17 91.7 202 33.2
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.1e-16 90.1 118 44.9
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.0e-14 83.6 66 59.1
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.3e-13 78.2 95 46.3
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 4.1e-12 75.9 72 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.6e-11 73.9 111 36.9
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.0e-11 73.6 217 28.6
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.7e-11 73.2 138 31.2
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 8.0e-08 61.6 57 59.6
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 2.0e-06 57.0 59 50.8


User provided reference genes

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