Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.6e-208 729.2 357 100.0
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-186 656.4 351 91.2
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.7e-184 648.7 350 90.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 9.3e-161 570.5 350 76.3
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.5e-155 551.6 350 74.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 6.6e-151 537.7 350 73.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.5e-150 535.8 350 73.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 7.4e-150 534.3 353 70.3
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 9.6e-150 533.9 353 70.3
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.6e-149 531.9 353 70.0
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 4.8e-149 531.6 355 71.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-148 530.4 354 71.5
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.0e-148 528.5 354 70.9
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.3e-148 528.1 352 71.9
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.9e-148 527.7 353 71.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 6.9e-148 527.7 354 72.0
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 6.9e-148 527.7 354 72.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 6.9e-148 527.7 354 72.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 9.0e-148 527.3 348 72.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.2e-147 526.9 348 72.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-147 526.9 352 71.6
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.5e-147 526.6 348 73.6
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.5e-147 526.6 355 71.0
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.0e-147 526.2 354 70.6
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.6e-147 525.8 351 72.6
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 3.4e-147 525.4 352 71.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 4.5e-147 525.0 352 70.7
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 4.5e-147 525.0 354 71.2
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 5.8e-147 524.6 348 73.0
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 5.8e-147 524.6 349 71.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 5.8e-147 524.6 355 69.6
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 7.6e-147 524.2 354 71.2
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 7.6e-147 524.2 351 72.1
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 9.9e-147 523.9 352 71.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.3e-146 523.5 348 72.1
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.3e-146 523.5 353 70.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.7e-146 523.1 355 70.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.2e-146 522.7 353 68.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.2e-146 522.7 350 71.1
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.2e-146 522.7 350 70.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.9e-146 522.3 348 71.6
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.9e-146 522.3 352 70.5
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.8e-146 521.9 351 71.5
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.9e-146 521.5 354 70.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.9e-146 521.5 352 71.9
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 8.4e-146 520.8 351 71.2
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 8.4e-146 520.8 348 71.8
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-145 520.4 354 70.6
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.1e-145 520.4 353 69.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.1e-145 520.4 354 69.8
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.4e-145 520.0 354 70.6
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.4e-145 520.0 353 68.3
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.4e-145 520.0 353 69.1
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.4e-145 520.0 355 69.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.2e-145 518.8 351 70.7
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.2e-145 518.8 352 70.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 5.5e-145 518.1 354 69.8
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 9.3e-145 517.3 349 70.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 9.3e-145 517.3 344 72.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.6e-144 516.5 354 69.2
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.6e-144 516.5 351 69.8
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.1e-144 516.2 355 69.9
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.7e-144 515.8 354 70.3
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.7e-144 515.8 355 69.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.7e-144 515.8 355 69.3
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.7e-144 515.8 354 69.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.7e-144 515.8 354 68.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.5e-144 515.4 351 70.1
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.5e-144 515.4 350 70.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.5e-144 515.4 353 69.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 4.6e-144 515.0 348 71.0
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.0e-144 514.6 363 70.0
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 6.0e-144 514.6 354 68.9
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.9e-144 514.2 350 70.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.0e-143 513.8 350 69.4
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.8e-143 513.1 353 70.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.8e-143 513.1 351 69.2
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.8e-143 513.1 350 69.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.3e-143 512.7 351 69.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.0e-143 512.3 353 70.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.9e-143 511.9 352 69.9
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.1e-143 511.5 354 70.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 6.7e-143 511.1 349 70.2
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.5e-142 509.2 354 68.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 5.6e-142 508.1 354 68.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 2.1e-141 506.1 348 71.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.1e-141 506.1 349 69.1
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 2.8e-141 505.8 352 67.9
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 3.7e-141 505.4 358 67.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-141 505.0 355 69.0
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 6.2e-141 504.6 350 69.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.4e-140 502.7 354 68.1
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.4e-140 502.7 349 67.9
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.2e-139 500.4 353 66.6
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.5e-139 498.4 349 69.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 4.5e-139 498.4 348 67.2
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 5.8e-139 498.0 351 67.0
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.6e-139 497.7 347 69.2
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.3e-138 496.9 427 58.8
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.7e-138 496.5 388 62.6
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.7e-138 496.5 350 67.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.2e-138 496.1 389 63.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 3.2e-137 492.3 354 66.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.1e-136 489.6 347 67.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.1e-132 477.2 345 65.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 5.3e-132 474.9 353 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.0e-131 473.0 342 66.1
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.6e-128 463.4 358 65.4
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.8e-127 459.9 341 64.5
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.9e-127 458.8 352 62.2
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-126 456.8 292 72.9
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.5e-126 456.1 355 63.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 7.4e-126 454.5 353 63.5
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-123 447.2 354 62.7
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 5.0e-122 441.8 349 59.9
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 7.9e-120 434.5 352 60.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.5e-114 414.8 354 59.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.2e-109 399.8 258 72.9
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 7.2e-105 384.8 254 70.1
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.6e-102 376.3 348 56.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.7e-102 375.2 342 56.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-101 374.0 274 66.4
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.8e-101 372.1 257 68.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.2e-93 346.7 356 53.4
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.5e-90 335.1 227 70.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.8e-88 329.7 243 65.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.2e-80 304.3 288 55.6
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.2e-68 261.5 161 75.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-65 254.6 157 75.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 1.1e-63 248.1 191 61.3
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 8.1e-56 221.9 197 58.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.2e-52 209.9 257 44.4
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.3e-49 199.5 125 76.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 8.1e-48 195.3 108 78.7
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.4e-45 185.7 129 67.4
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.8e-43 178.7 233 45.9
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-26 124.8 90 64.4
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 7.4e-25 119.0 93 59.1
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.7e-24 116.7 67 76.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 3.4e-22 110.2 81 60.5
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-19 101.7 77 59.7
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.9e-18 96.7 205 32.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.1e-17 95.1 256 32.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.3e-17 93.6 79 59.5
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-15 88.2 62 67.7
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.4e-14 83.6 56 62.5
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.9e-12 77.8 135 36.3
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 4.2e-12 76.6 63 61.9
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-09 68.2 99 40.4
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 5.7e-09 66.2 38 71.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.3e-08 65.1 40 75.0
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.7e-08 64.7 45 71.1
TPR.G27806 Trifolium pratense HOM05D002051 ORTHO05D002041 3.7e-08 63.5 256 27.3
unitig_699.g19916 Utricularia gibba HOM05D002051 ORTHO05D002041 1.4e-07 61.6 254 25.6
Haze_00468 Corylus avellana HOM05D002051 ORTHO05D002041 2.4e-07 60.8 244 26.6
Cfa015997 Carpinus fangiana HOM05D002051 ORTHO05D002041 5.3e-07 59.7 246 26.8
Psat2g078800 Pisum sativum HOM05D002051 ORTHO05D002041 9.1e-07 58.9 277 23.1
FAN24G0773 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.2e-06 58.5 236 25.8
Phvul.008G164800 Phaseolus vulgaris HOM05D002051 ORTHO05D002041 1.5e-06 58.2 247 25.9
VMungo0647G1598 Vigna mungo HOM05D002051 ORTHO05D002041 1.5e-06 58.2 238 26.5
MBI06_g20721_MAGBIO Magnolia biondii HOM05D002051 ORTHO05D002041 2.0e-06 57.8 256 26.2
FvH4_2g26640 Fragaria vesca HOM05D002051 ORTHO05D002041 3.4e-06 57.0 236 25.0
TAR376G0379 Trochodendron aralioides HOM05D002051 ORTHO05D002041 4.5e-06 56.6 245 26.5
FAN27G1239 Fragaria x ananassa HOM05D002051 ORTHO05D002041 5.9e-06 56.2 236 24.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 7.7e-06 55.8 81 38.3


User provided reference genes

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