Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-106 389.4 186 100.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.9e-77 292.7 198 72.7
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 7.9e-55 217.6 200 60.0
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 7.7e-42 174.5 103 80.6
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.0e-37 159.8 202 46.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.6e-37 159.5 185 45.9
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.8e-36 156.0 204 45.1
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.1e-35 152.1 202 43.6
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 9.1e-35 151.0 198 43.9
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 9.1e-35 151.0 206 44.7
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 3.5e-34 149.1 206 42.7
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.5e-34 149.1 201 43.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 5.9e-34 148.3 201 42.3
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.0e-33 147.5 204 44.1
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.3e-33 147.1 204 46.6
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.7e-33 146.7 199 41.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.7e-33 146.7 198 41.9
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 3.8e-33 145.6 204 41.7
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.8e-33 145.6 204 43.1
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.8e-33 145.6 202 43.6
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.8e-33 145.6 202 43.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-32 144.1 193 45.1
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-32 144.1 193 45.1
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.1e-32 144.1 201 44.8
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.5e-32 142.9 219 41.1
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-31 140.6 211 41.7
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.2e-31 140.6 210 41.9
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.6e-31 140.2 203 41.4
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.1e-31 139.8 207 41.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.7e-31 139.4 203 42.9
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.6e-31 139.0 203 39.4
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.6e-31 139.0 203 39.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.1e-31 138.3 201 39.8
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 8.0e-31 137.9 204 40.2
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 8.0e-31 137.9 210 38.6
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-30 137.1 203 39.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.4e-30 137.1 203 42.4
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.8e-30 136.7 203 40.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.3e-30 136.3 203 41.9
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.0e-30 136.0 203 38.9
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.0e-30 136.0 203 38.9
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 5.2e-30 135.2 207 41.1
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.0e-29 133.3 198 39.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.4e-29 132.5 204 41.2
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 5.7e-29 131.7 204 40.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.7e-28 130.2 200 40.5
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.7e-28 130.2 200 40.5
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.8e-28 129.4 206 39.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.7e-28 129.0 208 42.8
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 3.7e-28 129.0 188 39.9
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 4.8e-28 128.6 208 38.5
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.8e-28 128.6 205 38.5
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.8e-28 128.6 204 38.2
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 8.3e-28 127.9 196 39.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.1e-27 127.5 204 40.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-27 127.5 207 39.1
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.4e-27 127.1 207 40.1
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.4e-27 127.1 208 39.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.8e-27 126.7 198 41.4
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.8e-27 126.7 206 39.3
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-27 126.3 206 40.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.4e-27 126.3 203 40.9
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 3.1e-27 125.9 209 39.7
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 3.1e-27 125.9 201 38.3
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 4.1e-27 125.6 198 37.4
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.1e-27 125.6 198 38.9
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 4.1e-27 125.6 200 38.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.1e-27 125.6 206 41.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 5.4e-27 125.2 221 38.0
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 7.0e-27 124.8 197 37.6
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 7.0e-27 124.8 197 37.6
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 7.0e-27 124.8 193 38.9
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 7.0e-27 124.8 195 38.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.2e-26 124.0 197 37.1
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.2e-26 124.0 200 38.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.2e-26 124.0 207 39.6
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.2e-26 124.0 203 38.4
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.2e-26 124.0 203 38.4
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.6e-26 123.6 203 38.4
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-26 123.6 202 37.6
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.0e-26 123.2 200 37.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.0e-26 123.2 206 39.8
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.5e-26 122.5 273 33.3
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 3.5e-26 122.5 200 36.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 4.5e-26 122.1 264 33.3
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.5e-26 122.1 200 38.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.7e-26 121.3 198 39.4
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.7e-26 121.3 205 39.0
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.0e-25 120.9 205 40.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-25 120.2 199 38.7
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.7e-25 120.2 199 38.7
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-25 120.2 200 35.5
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.7e-25 120.2 200 35.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.7e-25 120.2 200 37.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 2.9e-25 119.4 200 37.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 2.9e-25 119.4 200 37.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 3.8e-25 119.0 203 36.0
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.6e-25 117.9 208 35.6
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.6e-25 117.9 196 35.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-24 117.5 200 35.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.1e-24 117.5 203 35.0
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.1e-24 117.5 213 34.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.1e-24 117.5 200 35.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.5e-24 117.1 197 36.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-24 117.1 197 36.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.5e-24 117.1 197 36.5
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-24 117.1 198 37.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.9e-24 116.7 199 36.2
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.9e-24 116.7 197 35.0
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.3e-24 115.9 205 38.5
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 5.5e-24 115.2 215 37.2
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.5e-24 115.2 202 33.7
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-23 114.0 202 37.6
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.6e-23 113.6 219 34.2
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.6e-23 113.6 203 37.4
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.8e-23 112.8 201 34.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 4.7e-23 112.1 205 38.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 4.7e-23 112.1 202 35.6
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 6.1e-23 111.7 206 35.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.0e-22 110.9 202 33.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.0e-22 110.9 198 33.3
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-22 110.2 152 44.7
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.8e-22 110.2 203 35.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-22 109.8 214 37.9
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 3.0e-22 109.4 198 35.4
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 6.8e-22 108.2 200 36.5
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.2e-21 107.5 207 35.3
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.2e-21 107.5 200 36.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.5e-21 107.1 202 33.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 7.5e-21 104.8 207 36.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.5e-21 104.8 207 35.7
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.3e-20 104.0 196 33.2
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.3e-20 104.0 209 34.0
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 2.2e-20 103.2 195 33.8
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-19 99.8 92 54.3
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.4e-19 99.8 204 37.3
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 5.4e-19 98.6 151 39.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 7.8e-18 94.7 87 56.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 5.0e-17 92.0 92 51.1
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 8.6e-17 91.3 201 33.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.6e-16 88.6 93 51.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.6e-16 88.6 188 33.5
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 5.2e-14 82.0 157 34.4
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 5.2e-14 82.0 330 25.5
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 8.9e-14 81.3 136 40.4
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.8e-13 78.6 136 35.3
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.7e-12 75.9 87 46.0
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.1e-11 74.3 143 33.6
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.4e-11 73.2 86 45.3
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 7.0e-11 71.6 91 45.1
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.7e-10 69.7 98 36.7
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 7.8e-10 68.2 156 34.0
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.8e-10 68.2 42 76.2
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.8e-10 68.2 42 76.2
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 7.8e-10 68.2 42 78.6
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 5.0e-09 65.5 47 61.7
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 6.6e-09 65.1 50 60.0
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.1e-08 64.3 125 31.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 4.3e-08 62.4 182 27.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.6e-07 59.3 141 31.2
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 6.2e-07 58.5 177 26.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.8e-06 57.0 125 34.4
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 6.8e-06 55.1 86 37.2


User provided reference genes

Program Settings