Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 0.0e+00 1164.4 566 100.0
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 0.0e+00 1077.8 566 90.5
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 7.7e-312 1072.8 566 92.2
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 6.0e-271 937.2 566 77.7
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.3e-270 936.0 591 81.4
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 2.0e-266 922.2 565 76.5
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 5.1e-262 907.5 567 75.1
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 2.1e-260 902.1 564 75.2
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 8.9e-259 896.7 564 74.8
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 5.8e-258 894.0 564 75.4
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 9.3e-256 886.7 568 73.4
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 2.1e-255 885.6 566 74.2
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.7e-255 885.2 564 74.3
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.7e-254 882.5 566 73.3
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 3.0e-254 881.7 564 73.8
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.5e-253 879.4 601 70.2
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 1.9e-253 879.0 564 73.8
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 4.8e-252 874.4 562 74.6
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.4e-251 872.8 615 68.5
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.5e-250 869.4 525 78.1
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 4.2e-248 861.3 564 71.6
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 1.2e-247 859.8 544 74.3
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 3.0e-246 855.1 570 70.9
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.5e-245 852.8 567 72.0
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 5.6e-245 850.9 565 70.8
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.3e-244 849.7 565 71.3
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 3.1e-243 845.1 569 70.7
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 2.0e-242 842.4 566 70.3
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 5.8e-242 840.9 568 70.2
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 7.6e-242 840.5 568 71.5
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.6e-239 832.8 565 70.8
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 6.7e-238 827.4 569 70.1
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 1.1e-237 826.6 584 67.3
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 2.5e-237 825.5 570 69.3
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 1.6e-236 822.8 569 69.9
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.8e-235 819.3 566 68.0
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 1.8e-235 819.3 565 68.7
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.0e-234 815.8 568 68.3
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 2.6e-234 815.5 566 68.9
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 4.5e-234 814.7 564 68.6
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 4.2e-232 808.1 565 67.8
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 4.2e-232 808.1 565 67.8
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 9.3e-232 807.0 573 67.7
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 3.5e-231 805.1 565 67.1
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 6.0e-231 804.3 565 67.8
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 3.9e-230 801.6 563 69.3
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.1e-229 800.0 565 67.6
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.9e-229 799.3 566 67.5
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 1.9e-229 799.3 566 67.3
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 5.7e-229 797.7 565 68.0
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.3e-228 796.6 565 68.3
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.6e-228 796.2 574 68.5
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.7e-228 795.0 570 68.1
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 7.6e-226 787.3 559 68.3
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 7.2e-224 780.8 527 71.2
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 2.3e-222 775.8 566 65.4
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 6.7e-222 774.2 565 67.4
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 3.3e-221 771.9 525 69.1
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 5.7e-221 771.2 563 66.8
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 8.2e-220 767.3 525 69.7
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.2e-218 763.5 563 65.9
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 2.6e-218 762.3 570 64.2
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 8.5e-217 757.3 572 63.5
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 2.5e-216 755.7 523 70.0
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 2.5e-216 755.7 564 66.1
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 3.2e-216 755.4 570 63.9
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 2.3e-214 749.2 566 64.8
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.5e-213 746.5 570 63.2
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 1.3e-212 743.4 560 65.2
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 4.5e-210 734.9 528 68.4
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.3e-209 733.4 528 68.2
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 3.6e-207 725.3 460 75.9
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 3.9e-206 721.8 505 66.3
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.8e-203 713.0 460 73.9
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 3.5e-202 708.8 528 64.2
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 5.9e-202 708.0 563 62.2
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 3.2e-200 702.2 458 74.0
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 3.5e-194 682.2 495 68.5
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.8e-190 669.8 537 62.6
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 2.6e-189 666.0 685 52.4
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.9e-185 652.5 480 66.2
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 2.8e-180 636.0 569 56.6
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 2.3e-174 616.3 568 54.6
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 9.2e-171 604.4 596 53.7
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.1e-168 597.4 528 56.1
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.4e-166 590.5 529 56.0
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 8.3e-164 581.3 583 51.5
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.0e-162 576.6 532 55.1
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.8e-159 566.2 482 58.3
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 2.1e-154 550.1 403 65.8
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 1.9e-128 463.8 305 71.1
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 1.8e-121 440.7 315 67.6
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 2.1e-119 433.7 711 38.5
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 5.8e-117 425.6 340 61.5
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 6.0e-114 415.6 320 65.3
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 2.3e-113 413.7 607 39.9
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 2.1e-111 407.1 318 61.9
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 1.5e-109 401.0 302 61.3
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 3.3e-104 383.3 589 36.2
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.7e-100 370.9 248 70.6
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 2.9e-100 370.2 266 67.3
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 7.2e-99 365.5 261 65.5
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 2.0e-93 347.4 268 64.2
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 3.6e-90 336.7 262 62.6
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 1.3e-79 301.6 244 58.2
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 5.9e-77 292.7 208 68.3
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 7.5e-64 249.2 156 78.8
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 3.1e-62 243.8 194 57.7
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 1.0e-60 238.8 164 67.1
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.5e-59 234.2 208 55.8
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.6e-59 233.0 140 72.1
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 2.9e-55 220.7 309 40.8
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 1.3e-52 211.8 186 58.1
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 6.6e-44 183.0 171 58.5
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.3e-43 180.3 203 49.3
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 2.4e-38 164.5 169 53.8
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 2.5e-35 154.5 86 84.9
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 3.3e-27 127.5 91 61.5
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 5.8e-24 116.7 149 47.0
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 6.6e-20 103.2 115 48.7
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 6.2e-18 96.7 50 86.0
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 4.2e-14 84.0 84 51.2
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 4.8e-10 70.5 43 74.4
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.3e-07 62.4 64 48.4


User provided reference genes

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