Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 0.0e+00 1179.1 601 100.0
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 0.0e+00 1134.4 601 96.2
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 0.0e+00 1099.0 601 92.7
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 1.6e-290 1002.3 601 83.9
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 5.2e-289 997.3 599 83.6
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.5e-288 995.7 601 84.2
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 7.5e-288 993.4 525 94.7
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 7.5e-288 993.4 578 85.3
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 7.5e-288 993.4 603 83.1
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.3e-287 992.6 580 85.2
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 3.7e-287 991.1 605 82.8
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.4e-286 988.4 601 83.0
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.1e-286 988.0 574 86.2
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 4.1e-286 987.6 601 83.4
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 5.3e-286 987.3 558 86.9
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.0e-284 983.0 601 81.2
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.3e-284 982.6 601 82.0
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.3e-284 982.6 575 83.3
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.7e-284 982.2 576 85.1
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.2e-284 981.9 601 82.7
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 2.2e-284 981.9 552 86.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.8e-284 981.1 557 86.7
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 5.0e-284 980.7 603 82.1
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 5.0e-284 980.7 599 81.6
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.0e-284 980.7 575 85.7
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.5e-283 979.2 557 86.4
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.5e-283 979.2 572 84.6
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.5e-283 978.4 549 87.4
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 3.2e-283 978.0 605 81.7
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 3.2e-283 978.0 605 81.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 3.2e-283 978.0 554 85.9
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 7.2e-283 976.9 575 85.2
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.6e-282 975.7 579 84.5
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 4.7e-282 974.2 601 80.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.0e-281 973.0 601 81.2
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 6.8e-281 970.3 603 81.4
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 1.5e-280 969.1 622 79.7
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.5e-280 969.1 572 84.1
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.5e-280 969.1 572 84.1
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.6e-280 968.4 557 85.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.4e-280 968.0 599 80.5
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 4.4e-280 967.6 572 83.9
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 5.7e-280 967.2 565 84.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.5e-280 966.8 572 84.8
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.7e-279 965.7 600 80.5
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.7e-279 965.7 550 85.6
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 2.2e-279 965.3 551 86.4
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.8e-279 964.9 587 81.6
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 3.7e-279 964.5 598 81.6
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 6.3e-279 963.8 599 80.5
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 8.3e-279 963.4 562 85.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 8.3e-279 963.4 560 85.5
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 8.3e-279 963.4 572 83.4
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 4.1e-278 961.1 556 85.1
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 5.4e-278 960.7 575 84.5
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 7.0e-278 960.3 552 84.8
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 9.1e-278 959.9 570 82.1
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 7.7e-277 956.8 581 82.6
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 7.7e-277 956.8 545 85.9
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 7.7e-277 956.8 564 84.8
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 573 84.1
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.9e-276 954.9 571 82.0
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 5.0e-276 954.1 580 81.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.5e-276 953.7 577 83.0
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.1e-275 953.0 572 81.6
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.1e-275 953.0 573 81.8
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.5e-275 952.6 571 81.6
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.5e-275 952.6 542 86.9
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.5e-275 952.6 578 81.8
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.5e-275 951.8 571 82.3
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-274 949.5 573 81.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 2.7e-274 948.3 567 84.3
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.7e-274 947.6 583 82.2
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.0e-273 946.4 592 80.7
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 2.0e-272 942.2 575 81.2
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.6e-272 941.8 576 82.3
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 4.9e-271 937.6 542 84.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.4e-270 936.0 578 80.8
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 7.0e-270 933.7 561 83.2
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.0e-268 929.9 573 81.0
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.0e-268 929.9 601 79.9
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.9e-268 928.3 573 80.3
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 8.6e-268 926.8 577 78.9
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.1e-266 922.2 601 78.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.3e-265 918.7 565 79.8
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.1e-262 909.8 585 79.7
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 8.6e-260 900.2 567 79.2
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 5.2e-257 891.0 530 84.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.5e-256 889.4 572 79.2
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.9e-255 884.4 530 83.6
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 4.9e-255 884.4 542 78.6
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 7.8e-253 877.1 644 72.0
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.3e-252 876.3 591 76.0
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.3e-252 875.5 536 78.9
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 3.3e-251 871.7 560 78.2
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 2.1e-250 869.0 560 78.0
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.3e-247 859.8 479 87.5
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 6.4e-247 857.4 556 78.2
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 7.1e-246 854.0 541 77.3
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 1.5e-243 846.3 576 75.5
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.5e-243 843.6 593 74.9
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 8.9e-241 837.0 559 73.7
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.2e-232 810.1 548 72.3
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.4e-231 803.9 549 74.9
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 8.4e-231 803.9 471 84.3
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.6e-229 799.7 463 84.0
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.0e-228 797.0 541 72.8
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 8.1e-226 787.3 546 70.7
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 7.6e-224 780.8 532 72.0
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.7e-213 745.7 553 69.6
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 6.2e-210 734.6 518 72.4
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.1e-193 679.1 523 68.8
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 2.5e-190 669.5 405 82.5
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 7.2e-190 667.9 556 60.3
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 8.2e-170 601.3 410 75.6
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 5.3e-169 598.6 554 60.1
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 7.7e-168 594.7 341 87.1
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 2.4e-161 573.2 510 58.2
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.5e-158 563.9 356 79.2
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 4.7e-157 558.9 544 53.3
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 9.5e-134 481.5 257 92.2
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.2e-133 481.1 570 48.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.1e-101 374.0 259 71.8
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.3e-93 348.2 188 85.1
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.9e-74 283.9 366 48.4
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.5e-70 271.6 210 65.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 9.4e-57 225.7 198 57.6
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 4.4e-46 190.3 173 61.8
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.8e-44 184.9 116 79.3
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 7.0e-44 183.0 153 65.4
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.2e-40 172.2 102 82.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.1e-36 157.5 118 62.7
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.1e-31 141.0 314 32.5
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.1e-28 132.5 76 88.2
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 1.0e-26 125.9 312 32.7
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 9.2e-20 102.8 84 65.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.9e-17 95.1 58 79.3
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 7.5e-14 83.2 138 41.3
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.7e-13 82.0 43 81.4
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 2.2e-13 81.6 126 43.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 3.7e-13 80.9 45 75.6
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.4e-12 79.0 120 45.8
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 3.2e-12 77.8 47 76.6
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 1.9e-09 68.6 71 50.7
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.2e-08 63.5 94 42.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.1e-07 62.8 70 55.7
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 5.2e-07 60.5 35 74.3
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 2.0e-06 58.5 112 39.3
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 5.8e-06 57.0 44 61.4


User provided reference genes

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