Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 1.2e-225 786.2 399 100.0
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 1.7e-192 676.0 399 85.2
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 5.6e-191 671.0 399 84.7
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 1.2e-161 573.5 336 85.7
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 4.4e-135 485.3 389 63.5
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 9.4e-130 467.6 394 60.7
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 2.6e-127 459.5 391 59.3
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 2.2e-126 456.4 394 61.2
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 2.2e-126 456.4 394 60.9
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 1.1e-125 454.1 392 60.5
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.4e-125 453.8 389 59.9
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 2.0e-124 449.9 387 59.7
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 3.5e-124 449.1 389 59.6
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 1.9e-122 443.4 386 59.6
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 9.5e-122 441.0 394 57.4
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 1.6e-121 440.3 406 57.4
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 1.6e-121 440.3 394 55.6
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 6.4e-118 428.3 398 55.3
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 8.3e-118 427.9 398 56.0
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 7.0e-117 424.9 389 56.6
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.2e-116 424.1 391 56.5
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 1.6e-116 423.7 398 56.3
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.3e-115 420.6 403 56.3
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 2.3e-115 419.9 391 56.0
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 3.9e-115 419.1 336 62.8
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 1.2e-113 414.1 398 54.3
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 2.8e-113 412.9 398 53.5
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 4.7e-113 412.1 413 52.3
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 1.0e-112 411.0 394 55.1
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 6.8e-112 408.3 394 53.3
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 2.0e-111 406.8 400 54.5
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 4.4e-111 405.6 393 51.9
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 5.8e-111 405.2 385 55.3
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 7.5e-111 404.8 393 54.2
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 9.8e-111 404.4 393 53.4
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 1.3e-110 404.1 389 54.0
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 2.2e-110 403.3 399 53.1
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 4.9e-110 402.1 395 53.9
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 6.4e-110 401.7 392 53.3
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 1.9e-109 400.2 399 53.1
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 1.2e-108 397.5 389 52.7
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 1.6e-108 397.1 384 55.5
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 2.7e-108 396.4 391 54.2
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 6.0e-108 395.2 315 63.8
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 3.9e-107 392.5 393 53.2
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 4.3e-106 389.0 397 54.2
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 1.6e-105 387.1 388 52.8
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 2.1e-105 386.7 393 51.1
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 4.7e-105 385.6 367 54.0
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 8.1e-105 384.8 393 50.6
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 1.1e-104 384.4 391 51.7
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 1.5e-103 380.6 389 51.7
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 4.4e-103 379.0 392 50.8
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 7.5e-103 378.3 335 57.0
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 1.3e-102 377.5 393 50.4
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 2.9e-102 376.3 393 51.1
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 4.9e-102 375.6 386 50.5
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 1.1e-101 374.4 391 50.6
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 1.1e-101 374.4 393 49.6
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 1.4e-101 374.0 396 50.0
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 7.1e-101 371.7 395 49.4
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 1.6e-100 370.5 391 50.4
ECA240G2937 Erigeron canadensis HOM05D007013 ORTHO05D008999 2.1e-100 370.2 387 49.9
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.0e-99 367.9 392 50.5
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 3.0e-99 366.3 357 52.1
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 8.6e-99 364.8 390 49.5
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 1.1e-98 364.4 392 49.2
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 1.5e-98 364.0 385 49.4
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 4.3e-98 362.5 405 48.9
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 1.6e-97 360.5 320 60.0
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 1.6e-97 360.5 393 49.9
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 1.2e-95 354.4 389 47.6
Prupe.4G215900 Prunus persica HOM05D007013 ORTHO05D008999 1.5e-95 354.0 399 50.6
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 9.9e-95 351.3 396 48.5
FAN11G2199 Fragaria x ananassa HOM05D007013 ORTHO05D008999 1.7e-94 350.5 386 51.3
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 1.7e-94 350.5 342 52.6
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 2.9e-94 349.7 338 52.7
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 1.1e-93 347.8 382 48.7
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 1.0e-91 341.3 317 53.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 3.9e-91 339.3 394 49.0
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 1.9e-90 337.0 392 46.7
Lsat_1_v5_gn_9_93121 Lactuca sativa HOM05D007013 ORTHO05D008999 2.1e-89 333.6 388 48.5
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 2.6e-87 326.6 314 54.1
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.6e-81 306.2 297 53.5
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 3.1e-80 303.1 264 59.1
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.0e-75 288.1 314 48.1
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 1.3e-75 287.7 408 41.4
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 4.3e-74 282.7 419 39.1
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 3.6e-73 279.6 306 49.7
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.6e-68 264.2 290 47.6
SMO367G1261 Selaginella moellendorffii HOM05D007013 ORTHO05D008999 2.7e-68 263.5 376 40.7
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 8.7e-67 258.5 268 52.2
PGSC0003DMG400022313 Solanum tuberosum HOM05D007013 ORTHO05D008999 2.0e-63 247.3 279 45.9
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 1.0e-62 245.0 292 46.9
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 8.7e-59 231.9 240 52.5
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 3.9e-51 206.5 229 48.5
CARHR096240 Cardamine hirsuta HOM05D007013 ORTHO05D008999 1.1e-45 188.3 215 46.0
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 1.9e-45 187.6 266 42.1
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 3.7e-41 173.3 392 33.2
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-39 167.5 285 38.6
CBR_g39764 Chara braunii HOM05D007013 ORTHO05D008999 2.6e-34 150.6 360 31.4
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 6.3e-33 146.0 199 41.2
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 4.1e-32 143.3 285 35.1
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 2.1e-28 131.0 235 36.2
FAN16G0901 Fragaria x ananassa HOM05D007013 ORTHO05D008999 3.6e-28 130.2 99 66.7
TWI34G0353 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 2.3e-19 100.9 144 38.9
MELO3C022571.2 Cucumis melo HOM05D016993 ORTHO05D019020 5.2e-19 99.8 58 86.2
MELO3C025412.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.2e-18 98.6 57 86.0
MELO3C029988.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.5e-18 98.2 58 84.5
MELO3C029511.2 Cucumis melo HOM05D007013 ORTHO05D029173 1.7e-17 94.7 56 85.7
MELO3C029866.2 Cucumis melo HOM05D007013 ORTHO05D029173 8.3e-17 92.4 57 80.7
RcHm_v2.0_Chr4g0424981 Rosa chinensis HOM05D007013 ORTHO05D008999 5.4e-16 89.7 115 45.2
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 3.4e-10 70.5 100 36.0
SEGI_13858 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 3.1e-08 63.9 94 38.3
Rhsim06G0218700 Rhododendron simsii HOM05D007013 ORTHO05D008999 4.5e-07 60.1 93 36.6


User provided reference genes

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