Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010830 Citrullus lanatus HOM05D006843 ORTHO05D008517 5.7e-206 720.7 368 100.0
CsaV3_7G021850 Cucumis sativus L. HOM05D006843 ORTHO05D008517 9.2e-180 633.6 368 87.0
MELO3C013160.2 Cucumis melo HOM05D006843 ORTHO05D008517 7.8e-179 630.6 368 87.8
Sed0013659 Sechium edule HOM05D006843 ORTHO05D008517 2.9e-157 558.9 369 78.6
CSS0043197 Camellia sinensis var. sinensis HOM05D006843 ORTHO05D008517 2.7e-131 472.6 369 66.1
Thecc.07G035800 Theobroma cacao HOM05D006843 ORTHO05D008517 1.3e-128 463.8 363 67.5
GSVIVG01037656001 Vitis vinifera HOM05D006843 ORTHO05D008517 2.1e-128 463.0 363 67.8
CiPaw.11G190100 Carya illinoinensis HOM05D006843 ORTHO05D008517 1.1e-127 460.7 369 66.1
Cfa020337 Carpinus fangiana HOM05D006843 ORTHO05D008517 9.0e-127 457.6 369 66.9
Actinidia05093 Actinidia chinensis HOM05D006843 ORTHO05D008517 7.6e-126 454.5 368 63.6
Gohir.A01G079900 Gossypium hirsutum HOM05D006843 ORTHO05D008517 1.3e-125 453.8 333 69.7
Gohir.D01G067100 Gossypium hirsutum HOM05D006843 ORTHO05D008517 4.9e-125 451.8 357 65.8
Prupe.4G214500 Prunus persica HOM05D006843 ORTHO05D008517 4.9e-125 451.8 330 69.7
Rhsim06G0217400 Rhododendron simsii HOM05D006843 ORTHO05D008517 4.9e-125 451.8 330 68.8
QL08p010009 Quercus lobata HOM05D006843 ORTHO05D008517 2.5e-124 449.5 331 70.4
Haze_09681 Corylus avellana HOM05D006843 ORTHO05D008517 4.2e-124 448.7 369 66.1
Gorai.002G089000 Gossypium raimondii HOM05D006843 ORTHO05D008517 1.6e-123 446.8 333 68.8
CiPaw.12G130200 Carya illinoinensis HOM05D006843 ORTHO05D008517 4.6e-123 445.3 366 64.5
Manes.03G129700 Manihot esculenta HOM05D006843 ORTHO05D008517 6.0e-123 444.9 369 63.4
Duzib268G1400 Durio zibethinus HOM05D006843 ORTHO05D008517 1.0e-122 444.1 357 65.8
MD11G1217200 Malus domestica HOM05D006843 ORTHO05D008517 1.8e-122 443.4 329 68.4
CANSAT11G0475 Cannabis sativa HOM05D006843 ORTHO05D008517 1.1e-121 440.7 333 67.6
TWI39G1240 Tripterygium wilfordii HOM05D006843 ORTHO05D008517 2.5e-121 439.5 363 64.2
Ciclev10008752m.g Citrus clementina HOM05D006843 ORTHO05D008517 3.7e-120 435.6 310 70.3
Dinv22258 Davidia involucrata HOM05D006843 ORTHO05D008517 4.8e-120 435.3 345 64.9
Ca_06326_v3 Cicer arietinum L. HOM05D006843 ORTHO05D008517 6.3e-120 434.9 330 66.7
Nn1g03519 Nelumbo nucifera HOM05D006843 ORTHO05D008517 3.1e-119 432.6 311 68.5
Glyma.14G022900 Glycine max HOM05D006843 ORTHO05D008517 5.3e-119 431.8 369 63.1
Hma1.2p1_0673F.1_g201400 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 5.3e-119 431.8 305 69.2
Potri.011G090700 Populus trichocarpa HOM05D006843 ORTHO05D008517 5.3e-119 431.8 368 62.5
Sc03g0008560 Simmondsia chinensis HOM05D006843 ORTHO05D008517 6.9e-119 431.4 362 63.0
Cpa.g.sc12.302 Carica papaya HOM05D006843 ORTHO05D008517 1.5e-118 430.3 364 63.5
Phvul.008G268300 Phaseolus vulgaris HOM05D006843 ORTHO05D008517 2.2e-117 426.4 365 62.7
Glyma.02G291800 Glycine max HOM05D006843 ORTHO05D008517 6.5e-117 424.9 336 66.1
LjContig00272g0007634 Lotus japonicus HOM05D006843 ORTHO05D008517 8.5e-117 424.5 370 62.4
PGR083G2310 Punica granatum HOM05D006843 ORTHO05D008517 5.5e-116 421.8 337 65.0
Lalb_Chr04g0248381 Lupinus albus HOM05D006843 ORTHO05D008517 2.7e-115 419.5 310 67.7
VMungo0647G1675 Vigna mungo HOM05D006843 ORTHO05D008517 6.1e-115 418.3 336 66.1
Medtr5g092970 Medicago truncatula HOM05D006843 ORTHO05D008517 1.4e-114 417.2 325 64.3
TAR624G1415 Trochodendron aralioides HOM05D006843 ORTHO05D008517 1.4e-114 417.2 364 61.8
arahy.Tifrunner.gnm1.ann1.Q92UKX Arachis hypogaea HOM05D006843 ORTHO05D008517 1.8e-114 416.8 336 65.2
Peaxi162Scf00235g00218 Petunia axillaris HOM05D006843 ORTHO05D008517 3.9e-114 415.6 324 65.1
arahy.Tifrunner.gnm1.ann1.0IA02T Arachis hypogaea HOM05D006843 ORTHO05D008517 8.8e-114 414.5 336 64.9
arahy.Tifrunner.gnm1.ann1.57CCTN Arachis hypogaea HOM05D006843 ORTHO05D008517 8.8e-114 414.5 336 64.9
arahy.Tifrunner.gnm1.ann1.BV1YAY Arachis hypogaea HOM05D006843 ORTHO05D008517 8.8e-114 414.5 336 64.9
arahy.Tifrunner.gnm1.ann1.H57FKH Arachis hypogaea HOM05D006843 ORTHO05D008517 8.8e-114 414.5 336 64.9
TPR.G1211 Trifolium pratense HOM05D006843 ORTHO05D008517 1.1e-113 414.1 354 61.0
arahy.Tifrunner.gnm1.ann1.J1CT6Y Arachis hypogaea HOM05D006843 ORTHO05D008517 3.3e-113 412.5 335 64.2
Nitab4.5_0003495g0070 Nicotiana tabacum HOM05D006843 ORTHO05D008517 3.3e-113 412.5 341 62.5
AUR62015782 Chenopodium quinoa HOM05D006843 ORTHO05D008517 4.3e-113 412.1 304 67.4
Sabra11G0086300 Salix brachista HOM05D006843 ORTHO05D008517 7.4e-113 411.4 366 61.5
Psat2g011720 Pisum sativum HOM05D006843 ORTHO05D008517 3.7e-112 409.1 352 60.8
Cc05_g13830 Coffea canephora HOM05D006843 ORTHO05D008517 1.4e-111 407.1 364 58.5
PGSC0003DMG402022316 Solanum tuberosum HOM05D006843 ORTHO05D008517 3.1e-111 406.0 311 65.6
MSTRG.6924 Avicennia marina HOM05D006843 ORTHO05D008517 5.3e-111 405.2 319 65.2
Carub.0007s1386 Capsella rubella HOM05D006843 ORTHO05D008517 5.3e-111 405.2 332 63.0
Eucgr.F00758 Eucalyptus grandis HOM05D006843 ORTHO05D008517 5.3e-111 405.2 335 63.9
Thhalv10025611m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 1.2e-110 404.1 332 63.0
Solyc07g064630.4 Solanum lycopersicum HOM05D006843 ORTHO05D008517 1.5e-110 403.7 307 65.8
AT4G26980 Arabidopsis thaliana HOM05D006843 ORTHO05D008517 3.4e-110 402.5 331 62.2
THA.LOC104809268 Tarenaya hassleriana HOM05D006843 ORTHO05D008517 5.9e-110 401.7 358 57.5
A03p56990 Brassica napus HOM05D006843 ORTHO05D008517 7.7e-110 401.4 337 61.4
Lsat_1_v5_gn_7_109981 Lactuca sativa HOM05D006843 ORTHO05D008517 2.2e-109 399.8 306 65.4
MBI18_g14135_MAGBIO Magnolia biondii HOM05D006843 ORTHO05D008517 3.8e-109 399.1 335 61.2
CARHR234590 Cardamine hirsuta HOM05D006843 ORTHO05D008517 6.5e-109 398.3 298 67.8
RcHm_v2.0_Chr5g0040061 Rosa chinensis HOM05D006843 ORTHO05D008517 2.5e-108 396.4 331 62.5
AL7G25850 Arabidopsis lyrata HOM05D006843 ORTHO05D008517 3.2e-108 396.0 330 62.1
BcaC06g32719 Brassica carinata HOM05D006843 ORTHO05D008517 3.2e-108 396.0 334 60.8
Sopen07g032830 Solanum pennellii HOM05D006843 ORTHO05D008517 5.5e-108 395.2 314 64.3
Ah.04g165900 Amaranthus hybridus HOM05D006843 ORTHO05D008517 7.2e-108 394.8 334 61.4
HanXRQChr11g0337271 Helianthus annuus HOM05D006843 ORTHO05D008517 1.6e-107 393.7 365 57.3
Migut.M01756 Erythranthe guttata HOM05D006843 ORTHO05D008517 6.1e-107 391.7 330 61.5
Nitab4.5_0007360g0010 Nicotiana tabacum HOM05D006843 ORTHO05D008517 7.9e-107 391.3 299 64.9
FAN25G2076 Fragaria x ananassa HOM05D006843 ORTHO05D008517 1.8e-106 390.2 304 65.1
C07p55080 Brassica napus HOM05D006843 ORTHO05D008517 3.9e-106 389.0 338 60.4
FvH4_3g22820 Fragaria vesca HOM05D006843 ORTHO05D008517 5.1e-106 388.7 333 61.9
Aa31LG5G10440 Aethionema arabicum HOM05D006843 ORTHO05D008517 6.7e-106 388.3 337 60.5
FAN16G2069 Fragaria x ananassa HOM05D006843 ORTHO05D008517 2.6e-105 386.3 333 62.2
EL10Ac4g07802 Beta vulgaris HOM05D006843 ORTHO05D008517 6.3e-104 381.7 388 53.4
ECA236G1023 Erigeron canadensis HOM05D006843 ORTHO05D008517 6.3e-104 381.7 306 61.4
Hma1.2p1_0673F.1_g201390 Hydrangea macrophylla HOM05D006843 ORTHO05D008517 1.8e-103 380.2 310 62.3
Aqoxy4G01855 Aquilegia oxysepala HOM05D006843 ORTHO05D008517 3.1e-103 379.4 308 61.7
SGA_v2.0_scaffold165G38275 Striga asiatica HOM05D006843 ORTHO05D008517 1.4e-100 370.5 374 52.7
DCAR_012722 Daucus carota HOM05D006843 ORTHO05D008517 1.5e-97 360.5 325 57.5
HPP92_013325 Vanilla planifolia HOM05D006843 ORTHO05D008517 4.1e-95 352.4 330 54.5
Lj8A169G88 Lonicera japonica HOM05D006843 ORTHO05D008517 1.6e-94 350.5 297 62.0
BraA03t14769Z Brassica rapa HOM05D006843 ORTHO05D008517 2.6e-94 349.7 278 64.4
CAN.G337.136 Capsicum annuum HOM05D006843 ORTHO05D008517 3.5e-94 349.4 268 64.6
BolC7t46005H Brassica oleracea HOM05D006843 ORTHO05D008517 1.5e-92 344.0 267 64.4
AUR62020435 Chenopodium quinoa HOM05D006843 ORTHO05D008517 3.1e-87 326.2 367 51.2
Zm00001eb224560 Zea mays HOM05D006843 ORTHO05D008517 3.5e-86 322.8 267 58.1
unitig_8.g4621 Utricularia gibba HOM05D006843 ORTHO05D008517 1.2e-83 314.3 327 52.9
PSO063G3629 Papaver somniferum HOM05D006843 ORTHO05D008517 2.7e-83 313.2 309 55.7
PSO170G2271 Papaver somniferum HOM05D006843 ORTHO05D008517 2.0e-81 307.0 345 51.0
Zm00001eb273720 Zea mays HOM05D006843 ORTHO05D008517 3.4e-81 306.2 272 56.6
Mapoly0001s0246 Marchantia polymorpha HOM05D006843 ORTHO05D008517 5.4e-79 298.9 311 51.8
Pp3c9_17980 Physcomitrium patens HOM05D006843 ORTHO05D008517 9.5e-76 288.1 306 53.3
Thhalv10026846m.g Eutrema salsugineum HOM05D006843 ORTHO05D008517 2.9e-64 250.0 265 54.0
CBR_g34195 Chara braunii HOM05D006843 ORTHO05D008517 6.6e-61 238.8 368 40.2
SMO234G0011 Selaginella moellendorffii HOM05D006843 ORTHO05D008517 7.0e-55 218.8 256 45.7
Hund02000 Selenicereus undatus HOM05D006843 ORTHO05D008517 1.3e-53 214.5 222 52.7
ATR0490G005 Amborella trichopoda HOM05D006843 ORTHO05D008517 2.8e-51 206.8 186 57.0
Atru.chr2.3418 Acer truncatum HOM05D006843 ORTHO05D008517 2.0e-49 200.7 133 72.2
vmacro11722 Vaccinium macrocarpon HOM05D006843 ORTHO05D008517 2.4e-47 193.7 195 52.8
Haze_01866 Corylus avellana HOM05D006843 ORTHO05D008517 6.0e-46 189.1 190 60.0
Psat5g064560 Pisum sativum HOM05D006843 ORTHO05D008517 7.3e-44 182.2 133 63.2
Psat4g156200 Pisum sativum HOM05D006843 ORTHO05D008517 9.5e-44 181.8 133 63.2
Psat7g029280 Pisum sativum HOM05D006843 ORTHO05D008517 2.8e-43 180.3 133 61.7
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.3e-37 161.4 124 66.1
Os06g0679700 Oryza sativa ssp. japonica HOM05D006843 ORTHO05D008517 2.4e-34 150.6 124 58.1
CDE02G2447 Ceratophyllum demersum HOM05D006843 ORTHO05D008517 2.1e-27 127.5 220 35.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 5.8e-25 119.4 92 60.9
Psat3g185160 Pisum sativum HOM05D006843 ORTHO05D008517 5.8e-25 119.4 88 61.4
MCO05G180 Micromonas commoda HOM05D006843 ORTHO05D008517 9.3e-23 112.1 247 30.0
Dinv20053 Davidia involucrata HOM05D006843 ORTHO05D008517 2.5e-15 87.4 117 41.0
Psat7g126680 Pisum sativum HOM05D006843 ORTHO05D008517 1.3e-13 81.6 64 60.9
ATR0926G001 Amborella trichopoda HOM05D006843 ORTHO05D008517 5.5e-07 59.7 55 52.7
Cre01.g054650 Chlamydomonas reinhardtii HOM05D006843 ORTHO05D008517 2.1e-06 57.8 96 34.4


User provided reference genes

Program Settings