Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 0.0e+00 1929.8 1370 100.0
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 0.0e+00 1394.4 1231 75.1
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 0.0e+00 1367.4 1231 76.1
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 0.0e+00 1113.6 1067 67.1
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 1.1e-209 734.9 995 47.7
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 1.4e-201 708.0 965 54.8
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.7e-199 701.0 1066 47.7
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.9e-199 699.9 992 47.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 4.4e-195 686.4 1020 43.7
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.3e-194 684.9 1042 46.9
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 1.4e-193 681.4 1021 54.4
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 9.3e-193 678.7 1023 56.6
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-192 677.9 987 49.4
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.9e-190 671.0 988 56.8
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 4.3e-190 669.8 1025 48.5
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 6.2e-189 666.0 1016 41.9
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 8.1e-189 665.6 981 55.1
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.5e-187 661.4 1081 51.4
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 2.7e-184 650.6 992 57.9
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 7.4e-182 642.5 1042 46.0
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.2e-178 630.9 994 43.4
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 2.7e-176 624.0 1015 53.0
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.0e-175 622.1 1043 42.8
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.5e-174 618.2 995 43.6
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 2.6e-171 607.4 994 40.8
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 7.1e-169 599.4 1017 41.6
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 2.0e-163 581.3 913 45.1
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 6.5e-162 576.2 1029 41.4
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 1.8e-159 568.2 1014 39.9
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 7.4e-158 562.8 876 44.1
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 1.4e-156 558.5 999 54.0
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 5.3e-156 556.6 993 51.6
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 6.9e-156 556.2 1009 41.4
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 2.0e-155 554.7 1051 36.3
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 2.6e-155 554.3 982 43.2
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 4.5e-155 553.5 1050 44.3
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 1.4e-153 548.5 992 49.2
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 5.5e-153 546.6 991 52.9
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 7.2e-153 546.2 1059 40.2
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 1.4e-151 542.0 1039 43.4
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 6.7e-151 539.7 998 41.0
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 1.5e-150 538.5 1005 40.0
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.4e-148 531.9 990 46.1
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.4e-145 521.9 1038 46.0
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 4.2e-145 520.4 993 39.0
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 1.6e-144 518.5 984 41.2
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 4.7e-144 516.9 1014 40.9
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 8.8e-143 512.7 984 41.1
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 2.0e-142 511.5 1018 36.9
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 1.7e-141 508.4 737 47.4
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.7e-141 507.3 1017 45.6
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 6.3e-141 506.5 1034 38.6
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.7e-138 498.4 991 39.5
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 3.8e-138 497.3 1009 39.4
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 8.5e-138 496.1 701 44.9
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.0e-135 489.2 1022 39.0
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 5.2e-135 486.9 1015 35.4
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.2e-134 485.7 729 45.5
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 2.6e-134 484.6 732 48.0
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 4.4e-134 483.8 1024 39.0
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 8.2e-133 479.6 735 36.6
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 1.4e-132 478.8 637 53.2
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 3.1e-132 477.6 1012 46.7
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 1.7e-130 471.9 781 35.0
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 1.2e-128 465.7 726 36.0
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 4.0e-127 460.7 723 35.7
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 8.8e-127 459.5 752 37.2
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 8.8e-127 459.5 720 35.8
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 3.4e-126 457.6 906 38.4
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 4.4e-126 457.2 721 40.6
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 2.2e-125 454.9 991 38.6
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.4e-124 451.4 907 41.3
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 4.1e-124 450.7 988 38.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 9.1e-124 449.5 728 41.9
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 1.7e-122 445.3 969 40.0
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.9e-122 444.5 728 41.5
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.1e-121 442.6 728 41.3
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 5.2e-119 433.7 961 39.3
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 1.5e-118 432.2 723 46.6
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 2.6e-118 431.4 762 45.0
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 2.7e-115 421.4 946 30.9
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.2e-101 375.2 765 40.3
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 2.4e-100 371.7 1006 26.7
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.6e-90 337.0 612 47.4
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.8e-88 331.6 682 30.5
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 4.0e-87 327.8 653 40.1
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 5.8e-86 323.9 964 46.4
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 2.7e-83 315.1 626 30.5
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.4e-70 271.6 765 26.9
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 7.9e-67 260.4 325 42.2
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 1.3e-64 253.1 353 55.5
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 4.0e-63 248.1 222 53.6
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.6e-62 245.4 351 59.0
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 5.8e-62 244.2 599 38.2
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-59 236.1 265 47.5
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.8e-50 206.1 209 50.2
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 2.4e-47 195.7 191 50.3
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 1.2e-43 183.3 380 45.5
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 2.8e-40 172.2 192 45.8
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 3.7e-40 171.8 528 28.6
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 1.3e-37 163.3 401 30.7
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 2.2e-37 162.5 167 49.7
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.6e-27 128.6 144 48.6
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 4.7e-27 128.3 144 48.6
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 8.8e-26 124.0 161 42.2
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.3e-24 120.2 111 52.3
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.4e-23 116.7 88 68.2
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 2.1e-19 102.8 512 38.7
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 1.2e-17 97.1 100 49.0
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 7.0e-15 87.8 239 27.2
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.0e-13 81.6 120 38.3
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 5.5e-12 78.2 219 29.2
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.3e-10 72.8 76 53.9
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 8.8e-10 70.9 106 34.9
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 2.0e-09 69.7 78 43.6
Lj7A250T23 Lonicera japonica HOM05D002986 ORTHO05D007611 5.7e-09 68.2 280 22.9
COL.COLO4_22429 Corchorus olitorius HOM05D000173 ORTHO05D003903 9.8e-09 67.4 234 25.6
Gorai.005G269500 Gossypium raimondii HOM05D005622 ORTHO05D002854 1.3e-08 67.0 268 23.9
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 1.1e-07 63.9 245 23.7
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 1.1e-07 63.9 81 37.0
Gorai.010G245800 Gossypium raimondii HOM05D005622 ORTHO05D002854 1.8e-07 63.2 140 29.3
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.4e-07 62.8 129 37.2
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 4.1e-07 62.0 225 24.0
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 5.4e-07 61.6 78 43.6
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 5.4e-07 61.6 202 26.2
Solyc01g006850.1 Solanum lycopersicum HOM05D006596 ORTHO05D008497 5.4e-07 61.6 191 23.6
Sopen01g002840 Solanum pennellii HOM05D006596 ORTHO05D008497 9.1e-07 60.8 191 23.0
Sc04g0007650 Simmondsia chinensis HOM05D005622 ORTHO05D002854 1.2e-06 60.5 153 30.1
Thhalv10006939m.g Eutrema salsugineum HOM05D000104 ORTHO05D009920 1.6e-06 60.1 115 34.8
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 1.6e-06 60.1 218 21.1
Lj4P809T22 Lonicera japonica HOM05D006218 ORTHO05D007338 2.7e-06 59.3 109 29.4
Rhsim09G0035100 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.5e-06 58.9 165 30.3
Gohir.D11G332300 Gossypium hirsutum HOM05D006596 ORTHO05D008497 4.5e-06 58.5 181 27.6
Gorai.007G363200 Gossypium raimondii HOM05D006596 ORTHO05D008497 4.5e-06 58.5 181 27.6
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 4.5e-06 58.5 211 22.7


User provided reference genes

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