Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 2188.3 1126 100.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 2057.3 1147 92.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 2054.6 1147 92.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1961.4 1148 87.5
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1765.4 1150 79.2
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1762.7 1150 79.1
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1762.3 1150 79.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1756.5 1151 79.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1755.3 1150 78.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1149 78.3
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1151 77.8
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1733.8 1151 78.4
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1732.2 1149 77.5
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1727.2 1160 77.4
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1721.4 1150 77.4
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1150 77.1
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1718.0 1159 77.0
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1715.7 1151 77.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1711.8 1149 77.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1151 78.0
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1708.0 1151 77.9
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1706.0 1151 77.8
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1704.9 1150 76.3
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1702.6 1193 74.8
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1700.3 1197 74.5
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1698.7 1197 74.4
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1694.9 1197 74.4
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1692.2 1150 76.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1149 75.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1151 76.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1682.5 1152 75.5
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1150 75.1
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1148 76.0
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1670.6 1151 75.9
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1150 75.3
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1148 74.8
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1161 74.5
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1161 74.5
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1660.6 1148 74.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1660.2 1150 74.8
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1659.4 1146 74.9
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1657.9 1149 74.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1657.5 1148 74.9
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1208 72.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1649.8 1191 73.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1649.4 1149 74.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1644.4 1171 73.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1643.2 1153 74.2
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1643.2 1170 73.9
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1642.5 1188 72.6
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1641.3 1150 75.2
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1637.5 1150 75.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1633.2 1150 74.9
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1631.3 1148 73.3
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1630.5 1148 74.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1627.5 1148 74.0
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1626.7 1152 74.0
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1625.1 1148 74.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1620.9 1146 73.3
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1619.8 1150 73.5
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1152 73.8
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1618.2 1149 73.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1614.4 1180 71.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1609.3 1147 73.4
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1605.1 1132 74.3
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1603.6 1151 72.5
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1603.2 1150 72.2
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1600.1 1154 71.9
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1599.3 1137 73.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1594.3 1153 72.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1593.2 1106 75.3
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1590.9 1151 72.9
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1588.5 1207 70.2
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1157 71.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1586.6 1150 72.2
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1585.5 1148 73.4
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1584.7 1151 72.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1581.2 1180 71.3
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1579.7 1154 71.4
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1577.8 1078 76.6
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1574.7 1156 71.5
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1572.4 1152 72.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1571.6 1153 72.2
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1571.6 1208 68.8
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1571.2 1152 71.3
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1569.7 1151 72.3
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1568.5 1153 71.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1568.1 1148 72.3
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1566.2 1152 71.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1563.5 1147 71.4
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1563.1 1155 71.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1562.0 1149 71.6
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1562.0 1153 72.2
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1559.7 1170 71.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1153 71.1
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1557.3 1150 72.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1555.8 1158 71.4
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1553.1 1149 71.3
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1546.2 1108 72.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1546.2 1149 71.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1538.1 1157 69.4
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1533.1 1151 70.9
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1529.6 1157 70.6
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1529.6 1158 69.5
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1526.5 1151 71.3
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1526.1 1157 70.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1526.1 1050 75.9
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1523.8 1165 69.9
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1523.5 1209 67.7
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1510.4 1157 68.8
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1491.9 1148 69.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1483.4 1162 68.1
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1458.7 1159 67.1
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1456.8 1115 69.4
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1451.0 1158 66.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1445.6 1163 66.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1420.6 924 78.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1418.3 1150 65.3
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1415.6 1161 64.8
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1397.5 925 78.1
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1369.0 1058 69.0
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1350.5 1034 71.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1347.8 923 75.4
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1328.2 1149 63.4
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1281.2 923 73.5
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1216.1 954 67.9
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1185.2 886 70.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1169.5 908 70.4
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1138.3 1152 57.3
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1125.5 925 66.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1113.2 788 74.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1113.2 812 72.8
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.5e-310 1069.7 804 71.3
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 3.5e-307 1058.5 810 69.8
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 2.2e-285 986.1 721 72.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.0e-277 960.7 1145 50.4
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.0e-270 936.4 1154 47.7
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.1e-259 899.8 1191 45.4
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-251 874.0 520 84.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.5e-244 849.7 580 76.0
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 6.6e-237 825.1 713 62.1
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 9.3e-175 618.6 412 76.5
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.5e-151 539.7 338 81.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-121 441.4 882 37.3
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.7e-120 438.3 288 76.7
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 3.0e-120 437.6 288 76.7
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 3.0e-120 437.6 287 75.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.8e-109 401.7 599 43.6
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 7.8e-105 386.3 806 34.0
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 3.6e-102 377.5 281 70.5
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.3e-99 369.0 1299 28.1
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.4e-82 311.6 513 42.1
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.3e-80 305.1 208 70.7
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.3e-80 305.1 278 60.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 2.1e-78 298.5 205 71.2
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 9.0e-77 293.1 203 72.9
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 4.9e-75 287.3 191 73.8
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.6e-70 272.3 227 61.2
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 6.9e-69 266.9 256 58.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 5.1e-64 250.8 181 71.3
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 5.9e-60 237.3 144 81.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.4e-58 232.6 183 66.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.2e-51 208.8 132 81.8
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 6.5e-51 207.2 201 55.2
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.9e-48 198.0 118 86.4
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.4e-45 188.7 125 75.2
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 6.3e-38 164.1 92 92.4
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.1e-26 126.7 91 69.2
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.1e-26 126.7 91 69.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.9e-26 125.9 86 73.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.7e-22 111.7 78 73.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 4.5e-20 104.8 83 66.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.1e-17 95.9 79 57.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 8.9e-16 90.5 46 80.4
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.2e-15 90.1 59 72.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.3e-14 84.0 97 47.4
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 4.5e-12 78.2 79 50.6


User provided reference genes

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