Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 4.0e-238 827.8 448 100.0
Sed0010283 Sechium edule HOM05D005242 ORTHO05D006778 1.6e-40 171.4 233 52.8
CsaV3_7G024560 Cucumis sativus L. HOM05D005242 ORTHO05D006778 3.3e-38 163.7 234 48.3
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 6.8e-36 156.0 147 59.2
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.6e-29 134.8 462 30.5
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 5.8e-27 126.3 466 29.4
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 9.9e-27 125.6 158 49.4
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.7e-26 124.8 213 42.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.9e-26 124.0 195 43.6
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.9e-26 124.0 143 49.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 6.4e-26 122.9 225 37.8
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 8.4e-26 122.5 493 27.0
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 8.4e-26 122.5 395 31.4
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 8.4e-26 122.5 260 36.9
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.4e-25 121.7 260 35.0
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.4e-25 121.7 145 49.7
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.2e-25 120.6 142 46.5
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 9.3e-25 119.0 145 49.0
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.2e-24 118.6 343 32.1
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 3.5e-24 117.1 165 44.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 3.5e-24 117.1 462 32.0
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 6.0e-24 116.3 144 47.2
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.0e-24 116.3 264 34.1
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 6.0e-24 116.3 169 43.2
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 6.0e-24 116.3 359 30.6
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.8e-24 115.9 264 34.1
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 1.0e-23 115.5 144 47.2
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.0e-23 115.5 256 34.4
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.0e-23 115.5 292 32.9
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.0e-23 115.5 311 35.4
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.3e-23 115.2 485 31.1
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 1.7e-23 114.8 279 36.2
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.7e-23 114.8 180 43.3
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.7e-23 114.8 235 34.9
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 3.0e-23 114.0 241 36.9
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.9e-23 113.6 259 36.3
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.9e-23 113.6 222 36.5
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.9e-23 113.6 258 34.9
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 5.1e-23 113.2 244 36.1
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.1e-23 113.2 261 33.3
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.6e-23 112.8 188 38.8
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.6e-23 112.8 262 33.6
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 8.7e-23 112.5 295 32.9
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 8.7e-23 112.5 234 36.3
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 8.7e-23 112.5 281 31.3
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-22 112.1 262 34.7
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.1e-22 112.1 149 45.0
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.5e-22 111.7 223 36.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.5e-22 110.9 264 36.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 4.3e-22 110.2 161 43.5
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 5.6e-22 109.8 220 36.8
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 7.3e-22 109.4 211 37.9
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 7.3e-22 109.4 237 38.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 9.6e-22 109.0 146 44.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 9.6e-22 109.0 290 32.4
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.3e-21 108.6 186 38.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.3e-21 108.6 184 38.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.6e-21 108.2 261 36.4
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.8e-21 107.5 279 33.3
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 3.6e-21 107.1 241 33.6
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.6e-21 107.1 245 35.9
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 3.6e-21 107.1 166 44.0
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.8e-21 106.7 244 35.2
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 4.8e-21 106.7 285 31.2
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 6.2e-21 106.3 140 44.3
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 6.2e-21 106.3 310 31.9
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 8.1e-21 105.9 146 44.5
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.1e-20 105.5 316 31.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.8e-20 104.8 145 44.1
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.1e-20 104.0 143 43.4
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.1e-20 104.0 266 33.1
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 4.0e-20 103.6 485 26.8
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.0e-20 103.6 285 30.9
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 6.9e-20 102.8 227 35.2
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 9.0e-20 102.4 140 44.3
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.5e-19 101.7 143 44.1
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.6e-19 100.9 453 25.8
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 2.6e-19 100.9 144 42.4
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 2.6e-19 100.9 229 36.2
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.8e-19 99.8 150 42.0
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 9.9e-19 99.0 246 32.5
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 9.9e-19 99.0 145 44.1
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.3e-18 98.6 451 25.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.7e-18 98.2 291 30.9
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 2.9e-18 97.4 104 51.0
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 3.8e-18 97.1 206 36.9
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 6.4e-18 96.3 185 37.8
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 6.4e-18 96.3 144 40.3
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 1.4e-17 95.1 145 41.4
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 1.4e-17 95.1 140 39.3
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.2e-17 93.6 151 41.7
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 7.1e-17 92.8 397 28.5
CsaV3_7G024570 Cucumis sativus L. HOM05D005242 ORTHO05D006778 7.1e-17 92.8 103 55.3
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 7.1e-17 92.8 239 33.9
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.6e-16 91.7 248 31.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 2.1e-16 91.3 145 40.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.7e-16 90.9 133 42.9
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 2.7e-16 90.9 141 39.0
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 4.6e-16 90.1 145 39.3
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 7.9e-16 89.4 135 38.5
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 7.9e-16 89.4 141 41.1
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.3e-15 87.8 270 30.7
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.9e-15 87.0 374 28.1
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 3.9e-15 87.0 133 38.3
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.1e-14 85.5 287 30.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.1e-14 85.5 273 28.9
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.5e-14 85.1 264 27.3
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 1.5e-14 85.1 154 36.4
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.5e-14 85.1 211 31.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 2.5e-14 84.3 153 37.9
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.3e-13 82.0 182 33.0
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.6e-13 81.6 269 29.7
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 6.2e-13 79.7 165 37.0
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.8e-12 78.2 212 30.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 1.8e-12 78.2 99 43.4
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.4e-12 77.8 217 30.4
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.1e-12 77.4 128 35.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.1e-12 77.4 128 35.2
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 4.0e-12 77.0 217 32.7
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 6.9e-12 76.3 210 31.4
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.0e-11 74.7 170 32.4
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 4.9e-10 70.1 233 30.9
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.4e-10 69.7 194 32.5
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 6.4e-10 69.7 210 28.1
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 8.4e-10 69.3 146 34.9
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 1.4e-09 68.6 392 26.0
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.9e-09 68.2 88 46.6
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 4.2e-09 67.0 203 29.1
MELO3C024076.2 Cucumis melo HOM05D005242 ORTHO05D006778 9.3e-09 65.9 56 60.7
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 7.9e-08 62.8 59 49.2
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 6.7e-07 59.7 97 43.3
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 8.7e-07 59.3 142 31.7
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.5e-06 58.5 137 32.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 3.3e-06 57.4 344 26.5
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 5.6e-06 56.6 110 33.6


User provided reference genes

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