Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 1.2e-202 709.5 348 100.0
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.5e-195 686.0 348 96.8
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 5.1e-188 661.0 407 82.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 7.6e-176 620.5 350 88.9
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 5.9e-152 541.2 348 75.6
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 1.1e-150 537.0 349 75.4
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.1e-150 537.0 348 74.1
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.5e-150 535.8 341 74.5
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 7.2e-150 534.3 349 74.5
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 2.1e-149 532.7 346 74.6
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 3.6e-149 531.9 349 75.4
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 6.1e-149 531.2 349 73.6
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 3.9e-148 528.5 346 73.4
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 5.1e-148 528.1 345 73.6
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.1e-148 528.1 346 74.3
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 8.8e-148 527.3 347 72.9
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.5e-147 526.6 347 72.9
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 3.3e-147 525.4 347 73.5
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 7.4e-147 524.2 346 73.7
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 7.4e-147 524.2 345 73.9
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 9.7e-147 523.9 345 73.0
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 9.7e-147 523.9 346 74.0
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 4.8e-146 521.5 338 74.0
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 8.2e-146 520.8 348 72.1
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.8e-145 519.6 348 72.4
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 6.9e-145 517.7 348 71.6
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 6.9e-145 517.7 345 73.6
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.5e-144 516.5 376 68.6
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.5e-144 515.0 347 71.2
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 4.5e-144 515.0 345 73.9
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 4.5e-144 515.0 338 72.5
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 7.7e-144 514.2 343 73.2
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.0e-143 513.8 343 72.0
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.3e-143 513.5 349 70.5
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 1.3e-143 513.5 349 72.2
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.3e-143 513.5 343 72.9
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 1.7e-143 513.1 347 71.2
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 3.8e-143 511.9 345 73.0
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 6.5e-143 511.1 348 73.6
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.5e-143 510.8 348 72.4
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.4e-142 510.0 348 72.7
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 1.4e-142 510.0 344 70.9
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.2e-142 508.8 347 70.9
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 5.5e-142 508.1 348 70.4
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 7.2e-142 507.7 350 70.0
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 9.4e-142 507.3 346 72.0
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 1.6e-141 506.5 345 71.9
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.6e-141 505.4 343 72.6
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 6.1e-141 504.6 349 69.3
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.0e-140 503.8 338 70.7
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.0e-140 503.8 346 71.4
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 1.4e-140 503.4 348 69.8
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.4e-140 503.4 348 70.1
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 3.0e-140 502.3 347 72.0
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 3.9e-140 501.9 346 68.2
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.7e-140 501.1 346 70.8
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 8.8e-140 500.7 348 69.8
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.1e-139 500.4 346 70.8
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.5e-139 500.0 343 70.8
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.3e-138 496.9 347 71.2
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.7e-138 496.5 377 66.0
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 2.8e-138 495.7 346 70.2
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 6.3e-138 494.6 345 68.4
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.8e-137 493.0 347 67.4
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 1.8e-137 493.0 348 69.5
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.8e-137 493.0 347 69.7
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 1.8e-137 493.0 364 67.0
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 7.0e-137 491.1 348 69.8
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 5.9e-136 488.0 349 69.3
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.7e-135 486.5 345 68.7
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.7e-135 486.5 336 70.8
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 3.8e-135 485.3 324 72.5
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.9e-134 483.0 350 68.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 5.5e-134 481.5 347 68.6
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 5.5e-134 481.5 350 69.1
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 7.2e-134 481.1 329 71.1
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 2.7e-133 479.2 351 68.1
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 2.7e-133 479.2 351 68.1
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 6.1e-133 478.0 356 67.4
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 1.0e-132 477.2 351 68.1
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 4.0e-132 475.3 301 74.4
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 5.2e-132 474.9 344 67.2
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.1e-131 473.8 344 66.3
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 1.5e-131 473.4 346 67.1
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 2.6e-131 472.6 350 68.3
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.7e-130 469.9 346 67.1
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-130 469.5 350 66.9
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-130 469.5 350 66.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 3.7e-130 468.8 345 66.4
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 2.4e-129 466.1 342 66.4
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 3.1e-129 465.7 348 67.8
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 7.0e-129 464.5 281 78.3
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 2.7e-128 462.6 290 75.5
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 3.5e-128 462.2 344 65.4
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 1.3e-127 460.3 348 64.9
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 3.8e-127 458.8 348 65.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 5.0e-127 458.4 349 65.0
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 4.2e-126 455.3 346 62.7
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 9.4e-126 454.1 324 67.0
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 1.8e-124 449.9 344 66.0
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 9.1e-121 437.6 340 65.0
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.0e-115 419.9 325 62.2
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 2.7e-112 409.5 232 79.7
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 3.5e-112 409.1 246 76.4
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 7.5e-107 391.3 251 70.9
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 9.8e-107 391.0 251 70.5
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 5.4e-105 385.2 305 65.2
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.3e-103 380.6 331 60.1
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 1.5e-102 377.1 302 60.3
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.6e-101 372.5 325 59.1
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.6e-96 357.1 331 54.1
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.6e-93 347.1 232 70.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 3.4e-91 339.3 242 70.2
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 2.9e-90 336.3 242 71.1
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.5e-88 329.3 244 69.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.6e-88 328.9 244 69.7
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.8e-88 328.2 330 51.8
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.2e-85 320.9 239 66.9
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 4.9e-82 308.9 244 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.5e-67 260.8 173 72.3
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 4.3e-62 242.7 248 48.8
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.6e-59 233.4 165 67.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.2e-58 230.3 194 59.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.4e-57 226.9 196 60.2
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 3.1e-52 209.9 203 48.8
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 7.6e-51 205.3 180 56.7
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.3e-45 188.0 161 59.6
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.4e-25 121.3 73 78.1
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 1.4e-25 121.3 81 69.1
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 1.2e-16 91.7 57 66.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 8.5e-10 68.9 53 62.3


User provided reference genes

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