Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.7e-79 298.1 148 100.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 4.7e-50 201.4 185 59.5
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.0e-49 198.7 183 59.6
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.9e-43 179.5 183 55.7
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.4e-38 162.5 181 48.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.4e-38 162.5 181 48.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.4e-38 162.5 186 46.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.4e-38 162.5 184 50.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.1e-38 161.8 181 48.1
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.1e-38 161.8 186 46.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.2e-38 160.6 181 47.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 9.2e-38 160.6 186 46.2
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.6e-37 159.8 185 45.9
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.5e-37 158.7 180 46.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.5e-37 158.7 181 47.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 5.9e-37 157.9 180 48.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 5.9e-37 157.9 181 47.0
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 7.8e-37 157.5 181 47.5
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 7.8e-37 157.5 182 46.2
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 7.8e-37 157.5 184 45.1
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 7.8e-37 157.5 180 46.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.0e-36 157.1 181 47.0
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.0e-36 157.1 181 47.0
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.3e-36 156.8 185 45.4
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.7e-36 156.4 186 46.8
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.7e-36 156.4 182 45.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.3e-36 156.0 186 44.1
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.9e-36 155.6 187 46.5
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 5.0e-36 154.8 178 47.2
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.6e-36 154.5 183 45.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 6.6e-36 154.5 180 46.7
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 8.6e-36 154.1 178 47.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 8.6e-36 154.1 175 46.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.6e-36 154.1 182 45.6
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.1e-35 153.7 182 45.6
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.5e-35 153.3 180 47.2
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.5e-35 153.3 180 47.2
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 2.5e-35 152.5 185 44.9
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 4.3e-35 151.8 178 46.1
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 4.3e-35 151.8 175 45.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 9.5e-35 150.6 180 45.6
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 9.5e-35 150.6 187 43.9
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.2e-34 150.2 179 43.0
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.2e-34 150.2 181 41.4
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.2e-34 150.2 176 45.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.6e-34 149.8 186 42.5
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.6e-34 149.8 180 45.6
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-34 149.4 186 42.5
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.1e-34 149.4 179 44.7
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.8e-34 149.1 184 42.9
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 2.8e-34 149.1 184 41.3
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.6e-34 148.7 183 43.2
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 4.7e-34 148.3 175 45.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 4.7e-34 148.3 175 45.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.1e-34 147.9 175 47.4
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 6.1e-34 147.9 167 47.3
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 6.1e-34 147.9 173 46.2
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 8.0e-34 147.5 193 43.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.0e-34 147.5 180 46.1
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.4e-33 146.7 181 44.2
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.4e-33 146.7 184 41.3
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.4e-33 146.7 178 43.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.4e-33 146.7 181 44.2
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.8e-33 146.4 180 44.4
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.8e-33 146.4 180 44.4
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.8e-33 146.4 193 43.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.8e-33 146.4 181 43.6
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.3e-33 146.0 177 46.3
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.3e-33 146.0 178 42.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.3e-33 146.0 182 42.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.0e-33 145.6 184 45.1
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 3.0e-33 145.6 185 44.3
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 3.0e-33 145.6 168 45.8
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.0e-33 145.6 179 43.6
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 4.0e-33 145.2 178 42.7
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 4.0e-33 145.2 181 45.3
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 4.0e-33 145.2 184 42.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 4.0e-33 145.2 186 41.9
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 5.2e-33 144.8 176 44.3
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 6.8e-33 144.4 182 41.8
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 8.9e-33 144.1 181 43.6
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.2e-32 143.7 177 42.4
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.0e-32 142.9 181 40.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.4e-32 142.1 182 40.7
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-31 139.4 186 41.4
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.7e-31 138.7 181 42.0
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 3.7e-31 138.7 173 42.8
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 8.3e-31 137.5 182 41.2
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.4e-30 136.7 164 44.5
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 1.4e-30 136.7 180 40.0
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.2e-29 133.7 165 44.8
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-29 133.7 177 42.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.6e-29 133.3 199 39.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.0e-29 132.9 188 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 2.7e-29 132.5 181 39.8
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 3.5e-29 132.1 191 37.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.5e-29 132.1 165 45.5
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 4.6e-29 131.7 166 44.0
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-28 130.2 177 39.5
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-28 129.4 168 41.7
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 3.0e-28 129.0 181 40.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.9e-28 128.6 162 43.8
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.0e-28 128.3 99 60.6
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 5.0e-28 128.3 162 43.8
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.6e-28 127.5 176 43.2
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.1e-27 127.1 180 37.8
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.5e-27 125.9 175 42.3
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.5e-27 125.9 157 43.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.3e-27 125.6 173 42.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.6e-26 123.2 158 44.9
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.1e-26 122.9 165 41.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.8e-26 122.5 189 39.2
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-24 117.1 160 40.6
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-24 117.1 149 45.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.5e-24 116.7 76 64.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 5.8e-24 114.8 74 64.9
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-23 113.6 152 41.4
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 2.2e-23 112.8 74 63.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.2e-23 112.8 74 58.1
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.9e-23 112.5 74 60.8
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.4e-23 111.3 161 41.0
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 8.3e-23 110.9 161 39.8
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 8.3e-23 110.9 155 40.0
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 9.2e-22 107.5 168 40.5
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.6e-21 106.7 172 39.5
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.3e-20 103.6 159 40.9
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 7.3e-19 97.8 171 36.8
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 6.2e-18 94.7 53 75.5
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.8e-17 91.3 79 58.2
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-16 90.5 168 33.9
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.0e-08 63.2 43 67.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.6e-08 62.8 50 60.0
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.4e-06 57.0 48 58.3
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-06 56.6 76 39.5


User provided reference genes

Program Settings