Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 0.0e+00 1191.0 610 100.0
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 0.0e+00 1131.7 610 94.9
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 0.0e+00 1130.5 610 94.9
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 1.3e-308 1062.4 611 90.0
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 3.4e-304 1047.7 610 88.2
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.5e-275 952.6 622 78.8
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 5.3e-273 944.1 614 78.8
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.6e-272 941.8 614 79.0
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 4.9e-271 937.6 624 77.7
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 8.4e-271 936.8 612 77.6
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 5.4e-270 934.1 507 91.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 8.1e-266 920.2 614 77.0
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 2.0e-264 915.6 616 77.8
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 4.5e-264 914.4 631 75.6
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.7e-263 912.5 639 75.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 4.6e-261 904.4 625 75.2
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-259 899.8 625 76.3
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 7.4e-259 897.1 635 75.0
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 7.4e-259 897.1 635 75.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 3.7e-258 894.8 633 75.5
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 4.0e-257 891.3 626 74.6
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 2.6e-256 888.6 643 73.4
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 4.9e-255 884.4 618 76.9
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 4.9e-255 884.4 639 72.6
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.9e-255 884.4 618 75.1
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.4e-254 882.9 620 74.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 2.5e-254 882.1 617 76.3
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.2e-253 879.8 653 72.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.2e-253 879.8 623 74.8
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 5.1e-252 874.4 634 73.0
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 8.7e-252 873.6 613 74.9
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.7e-251 870.2 618 74.6
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.7e-251 870.2 649 71.3
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.3e-250 867.5 618 74.3
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 6.3e-250 867.5 617 75.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 3.1e-249 865.1 613 74.6
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 2.6e-248 862.1 609 74.7
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 3.4e-248 861.7 612 74.7
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.2e-247 859.0 618 73.6
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.9e-247 858.6 613 73.6
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 8.5e-247 857.1 644 71.7
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 1.9e-246 855.9 615 73.8
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 3.2e-246 855.1 618 73.3
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 7.2e-246 854.0 615 73.3
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.4e-244 849.7 618 72.8
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.8e-244 849.4 618 73.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 1.5e-243 846.3 639 70.4
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 7.4e-243 844.0 622 71.5
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.3e-242 843.2 764 61.9
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.0e-240 835.9 618 73.3
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 2.6e-240 835.5 618 73.5
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.4e-240 835.1 643 70.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.4e-240 835.1 625 70.9
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 5.9e-240 834.3 620 71.9
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.3e-239 833.2 626 70.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 2.2e-239 832.4 637 70.2
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 2.5e-238 828.9 640 69.8
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 4.2e-238 828.2 618 72.7
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 8.8e-236 820.5 621 71.5
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.5e-235 819.7 641 68.2
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.4e-233 812.4 634 67.5
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 6.5e-231 804.3 654 65.6
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.4e-230 803.1 635 66.9
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 7.2e-230 800.8 638 68.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.1e-229 797.7 618 71.2
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 1.4e-228 796.6 583 71.4
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 8.8e-228 793.9 625 68.2
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.0e-227 792.7 618 70.1
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 4.4e-227 791.6 620 69.4
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 9.7e-227 790.4 656 64.8
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 9.7e-227 790.4 646 66.4
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 1.1e-225 786.9 629 67.6
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.1e-225 785.0 569 72.1
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 5.3e-225 784.6 606 69.1
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 9.1e-225 783.9 616 68.2
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 9.1e-225 783.9 627 68.4
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 1.6e-224 783.1 634 66.9
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 3.5e-224 781.9 621 67.5
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 2.9e-223 778.9 635 65.5
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.9e-223 778.9 642 64.3
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.0e-223 778.1 630 65.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 6.5e-223 777.7 629 65.5
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 3.2e-222 775.4 624 66.3
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 6.1e-221 771.2 641 63.8
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 6.8e-220 767.7 620 66.9
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.7e-219 764.6 618 65.5
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 2.2e-218 762.7 619 66.6
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.8e-218 762.3 630 65.6
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 8.3e-218 760.8 631 65.6
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 3.1e-217 758.8 652 63.3
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 7.0e-217 757.7 624 65.2
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.2e-216 756.9 613 65.4
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.9e-215 752.3 610 65.4
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.9e-215 752.3 610 65.4
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 3.8e-215 751.9 646 63.0
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 5.0e-215 751.5 621 66.5
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.5e-214 750.0 646 62.1
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 4.2e-214 748.4 610 64.8
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 2.1e-213 746.1 610 64.6
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 1.0e-212 743.8 566 68.9
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 2.0e-211 739.6 622 64.5
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 1.8e-209 733.0 489 76.5
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.3e-202 710.3 618 62.1
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 6.6e-199 698.0 616 62.2
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 2.1e-197 693.0 459 76.3
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 3.6e-197 692.2 640 59.8
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 8.3e-194 681.0 613 61.5
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.4e-193 680.2 680 56.5
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.5e-190 669.5 617 58.5
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.2e-189 667.2 637 58.2
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.1e-189 666.4 457 75.3
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.9e-186 655.2 397 80.1
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 1.1e-182 644.0 627 59.5
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 9.2e-177 624.4 559 61.4
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 2.5e-174 616.3 822 46.6
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 4.3e-174 615.5 622 55.5
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 8.1e-173 611.3 461 66.8
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.3e-167 594.0 615 55.1
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 8.1e-165 584.7 616 53.4
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.3e-162 577.4 366 77.6
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 4.2e-161 572.4 659 49.0
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 4.2e-161 572.4 454 64.5
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.9e-158 563.5 315 85.1
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 7.6e-155 551.6 647 49.5
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 1.7e-154 550.4 647 49.1
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 6.7e-151 538.5 678 46.6
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.1e-150 537.7 300 84.0
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 3.7e-141 506.1 315 77.8
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 8.2e-133 478.4 315 74.6
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 1.4e-124 451.1 300 73.0
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 2.6e-123 446.8 559 46.2
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 3.0e-111 406.8 304 71.1
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.7e-104 382.9 257 72.0
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.7e-104 382.9 257 72.0
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.2e-67 261.9 227 63.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.3e-58 231.9 348 39.1
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 8.4e-53 212.6 241 56.0
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 1.8e-47 194.9 167 72.5
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.9e-34 150.6 191 51.3
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 9.6e-33 146.0 179 48.6
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 7.6e-30 136.3 320 33.1
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.4e-28 132.1 162 54.3
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-27 128.3 88 68.2
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.0e-26 125.9 339 33.0
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.0e-18 99.4 135 54.8
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.0e-18 99.4 92 65.2
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 7.4e-17 93.2 140 50.0
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 2.2e-16 91.7 106 56.6
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 3.7e-16 90.9 150 46.0
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 2.6e-14 84.7 152 42.8
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 2.7e-11 74.7 67 61.2
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 1.1e-07 62.8 165 36.4
Ca_26438_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 4.1e-07 60.8 135 40.7


User provided reference genes

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