Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 3.9e-143 511.5 270 100.0
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 2.1e-133 479.2 270 92.6
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.1e-132 476.9 270 92.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.7e-98 363.2 274 72.6
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.9e-98 362.5 273 70.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 6.5e-98 361.3 277 69.7
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.2e-97 359.0 272 69.9
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 1.2e-96 357.1 273 69.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 1.2e-96 357.1 271 69.4
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.2e-96 357.1 273 69.6
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.6e-96 355.1 274 67.9
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 6.0e-96 354.8 271 70.8
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.0e-95 354.0 278 65.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.0e-95 354.0 274 70.4
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.3e-95 353.6 273 69.2
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.8e-95 353.2 268 70.1
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.0e-95 352.4 273 69.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 3.9e-95 352.1 277 67.5
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 5.1e-95 351.7 270 68.1
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.1e-95 351.7 270 68.5
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 8.7e-95 350.9 273 69.2
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.1e-94 350.5 274 67.9
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 1.1e-94 350.5 269 70.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.5e-94 349.4 273 69.2
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.3e-93 347.1 271 67.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.6e-93 346.7 273 70.0
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.6e-93 346.7 276 67.0
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.6e-93 346.7 272 67.3
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 1.6e-93 346.7 272 68.4
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 2.1e-93 346.3 270 67.4
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 2.8e-93 345.9 274 67.2
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.8e-93 345.9 272 68.0
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 3.7e-93 345.5 274 66.8
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 6.2e-93 344.7 274 64.2
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 1.8e-92 343.2 278 67.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.1e-92 342.4 276 64.5
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 4.1e-92 342.0 274 65.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 4.1e-92 342.0 276 64.5
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 5.3e-92 341.7 271 70.1
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 6.9e-92 341.3 276 64.5
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 6.9e-92 341.3 195 93.3
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 9.0e-92 340.9 277 66.1
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.5e-91 340.1 272 66.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 5.8e-91 338.2 273 66.7
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.0e-90 337.4 263 67.7
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.0e-90 337.4 272 65.1
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 5.0e-90 335.1 271 66.8
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.1e-88 329.7 271 64.2
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.1e-88 329.7 276 63.8
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.7e-88 329.3 269 65.4
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.3e-87 326.2 273 63.4
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.9e-87 325.5 274 63.5
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.1e-86 323.9 313 58.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.1e-86 323.9 262 65.3
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.1e-86 323.9 270 63.3
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-86 323.2 287 60.6
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.5e-86 322.8 272 63.2
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 7.4e-86 321.2 269 63.9
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 9.7e-86 320.9 272 62.9
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 9.7e-86 320.9 274 63.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.6e-85 320.1 265 65.7
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.6e-85 320.1 271 62.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.2e-85 319.7 271 62.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 3.7e-85 318.9 271 62.4
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.8e-85 318.5 259 67.6
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.1e-84 317.4 273 63.4
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.4e-84 317.0 270 63.0
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-84 316.2 277 62.1
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-84 316.2 277 62.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 2.4e-84 316.2 270 63.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.3e-84 315.1 341 52.5
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 9.0e-84 314.3 270 62.6
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-83 313.9 277 62.1
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.5e-83 313.5 269 62.5
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 5.9e-83 311.6 269 61.7
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-82 309.3 277 61.0
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 8.5e-82 307.8 266 62.4
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-82 307.8 284 58.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.2e-81 305.8 270 60.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 5.5e-81 305.1 271 61.6
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 3.6e-80 302.4 267 62.9
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.4e-79 300.4 262 61.5
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.4e-79 300.4 249 64.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 3.9e-79 298.9 272 59.6
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 6.7e-79 298.1 271 63.1
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 7.4e-78 294.7 222 70.3
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.7e-77 293.5 248 62.9
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.6e-75 286.2 266 59.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.8e-74 282.3 246 62.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 7.9e-72 274.6 271 53.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 4.8e-69 265.4 270 52.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.5e-67 258.8 268 54.5
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 5.9e-67 258.5 290 52.4
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.1e-65 254.2 267 53.6
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.3e-63 246.5 192 66.1
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.0e-62 243.4 246 56.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.7e-58 230.3 270 47.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.2e-56 224.2 246 52.4
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 2.1e-56 223.4 263 49.4
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 8.0e-56 221.5 182 62.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-52 210.3 195 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 1.1e-49 201.1 258 43.4
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.7e-48 196.4 134 69.4
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 3.6e-48 196.1 254 42.9
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 4.0e-47 192.6 228 46.9
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.8e-39 167.2 341 37.5
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-36 157.5 130 62.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.8e-36 157.1 113 72.6
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.1e-36 156.0 113 71.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.1e-33 147.9 108 70.4
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.5e-30 137.5 84 77.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-30 136.3 84 78.6
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 6.4e-29 132.1 117 64.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-28 131.0 114 62.3
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.0e-26 124.8 141 48.2
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 3.9e-26 122.9 113 61.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 3.9e-26 122.9 113 61.1
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.5e-25 120.9 271 33.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 2.5e-25 120.2 108 60.2
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 5.6e-25 119.0 104 60.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 4.7e-24 115.9 250 32.0
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-23 114.0 110 57.3
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.4e-20 103.6 74 73.0
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-20 103.6 155 44.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.2e-19 101.3 60 80.0
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-18 97.4 74 66.2
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 8.6e-18 95.1 54 85.2
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 3.3e-17 93.2 116 47.4
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 4.3e-17 92.8 80 60.0
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 4.3e-17 92.8 69 62.3
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 3.6e-16 89.7 63 66.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 2.3e-15 87.0 103 50.5
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.1e-09 68.2 98 42.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 2.5e-09 67.0 82 48.8


User provided reference genes

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