Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 4.6e-131 471.5 281 100.0
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.2e-94 350.5 269 81.0
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 8.0e-51 204.9 283 55.8
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.3e-16 91.3 328 29.6
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.3e-15 85.1 350 27.4
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.6e-14 82.8 379 29.3
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 7.9e-14 82.0 345 30.1
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.0e-13 80.1 379 29.6
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 7.4e-12 75.5 360 28.6
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.6e-11 74.3 127 41.7
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.7e-11 73.2 198 31.8
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 1.4e-10 71.2 127 38.6
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 1.4e-10 71.2 127 38.6
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.8e-10 70.9 197 31.5
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.4e-10 70.5 197 31.5
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 4.0e-10 69.7 126 44.4
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 5.3e-10 69.3 128 36.7
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 5.3e-10 69.3 127 38.6
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 6.9e-10 68.9 143 35.7
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.2e-09 68.2 126 38.9
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 1.5e-09 67.8 407 24.8
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 1.5e-09 67.8 389 27.0
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.5e-09 67.8 403 25.8
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 5.8e-09 65.9 202 30.7
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 5.8e-09 65.9 127 44.1
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 5.8e-09 65.9 117 39.3
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 7.6e-09 65.5 334 29.6
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 7.6e-09 65.5 126 34.9
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.9e-09 65.1 127 37.8
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.7e-08 64.3 132 34.1
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-08 63.9 205 29.3
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.9e-08 63.5 168 36.9
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 2.9e-08 63.5 126 35.7
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 3.8e-08 63.2 330 28.2
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 3.8e-08 63.2 126 44.4
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.8e-08 63.2 131 36.6
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 3.8e-08 63.2 143 32.9
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 3.8e-08 63.2 301 28.9
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.9e-08 62.8 131 44.3
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 6.4e-08 62.4 126 33.3
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 6.4e-08 62.4 127 39.4
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 8.4e-08 62.0 53 64.2
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 8.4e-08 62.0 53 64.2
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 8.4e-08 62.0 294 28.9
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 1.4e-07 61.2 127 40.2
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 1.4e-07 61.2 127 36.2
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.4e-07 61.2 163 32.5
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.4e-07 61.2 126 41.3
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.9e-07 60.8 143 32.2
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.9e-07 60.8 131 42.0
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.2e-07 60.1 138 42.8
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.2e-07 60.1 168 30.4
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.2e-07 60.1 163 38.7
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 4.2e-07 59.7 127 41.7
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.2e-07 59.7 138 42.0
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 5.5e-07 59.3 349 26.6
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.5e-07 59.3 129 41.1
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 5.5e-07 59.3 155 36.8
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 7.1e-07 58.9 126 41.3
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 9.3e-07 58.5 131 38.2
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 9.3e-07 58.5 162 35.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 1.2e-06 58.2 128 34.4
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.6e-06 57.8 130 33.1
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.6e-06 57.8 128 41.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.1e-06 57.4 132 40.9
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 2.1e-06 57.4 129 40.3
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-06 57.0 180 35.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 3.5e-06 56.6 165 32.7
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 6.0e-06 55.8 163 31.9
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 7.9e-06 55.5 420 23.6
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 7.9e-06 55.5 128 33.6


User provided reference genes

Program Settings