Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 5.2e-108 394.4 203 100.0
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 2.6e-91 339.0 198 88.9
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 6.3e-90 334.3 207 84.5
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 2.3e-87 325.9 197 84.8
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 3.6e-69 265.4 192 69.3
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.8e-68 263.1 187 71.1
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 8.9e-68 260.8 200 66.5
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 2.6e-67 259.2 200 65.5
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 2.6e-67 259.2 200 66.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 3.4e-67 258.8 185 70.3
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 5.8e-67 258.1 183 71.6
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 5.8e-67 258.1 183 67.8
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 9.9e-67 257.3 199 66.8
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 2.2e-66 256.1 198 65.7
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 4.9e-66 255.0 194 66.5
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 6.4e-66 254.6 191 66.5
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 8.4e-66 254.2 194 66.5
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 8.4e-66 254.2 170 71.2
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 3.2e-65 252.3 211 63.5
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 5.4e-65 251.5 201 63.2
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 7.1e-65 251.1 201 65.2
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 9.2e-65 250.8 179 69.3
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.2e-64 250.4 187 65.8
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 1.6e-64 250.0 189 68.3
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 2.1e-64 249.6 199 64.8
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 3.5e-64 248.8 171 71.3
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.3e-63 246.9 200 62.5
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 2.3e-63 246.1 202 63.4
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.3e-63 246.1 202 62.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.6e-63 244.6 212 59.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 6.6e-63 244.6 200 64.5
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 1.1e-62 243.8 202 61.9
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.1e-62 243.8 186 67.2
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 1.5e-62 243.4 171 69.0
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.5e-62 243.4 186 67.2
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.5e-62 243.4 167 69.5
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 2.5e-62 242.7 195 65.6
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 2.5e-62 242.7 188 63.3
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 2.5e-62 242.7 200 60.5
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.5e-62 242.7 206 60.7
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.5e-62 242.7 186 66.7
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 3.3e-62 242.3 201 59.7
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 9.6e-62 240.7 185 65.9
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.2e-61 240.4 192 65.6
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 3.6e-61 238.8 187 64.2
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 8.1e-61 237.7 175 68.6
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.4e-60 236.9 183 63.4
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.4e-60 236.9 183 63.4
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.8e-60 236.5 211 57.8
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.1e-60 235.7 187 64.7
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 4.0e-60 235.3 197 62.4
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 8.9e-60 234.2 175 66.3
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 1.2e-59 233.8 171 66.1
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.5e-59 233.4 174 66.1
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 7.6e-59 231.1 199 61.3
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.3e-58 230.3 203 60.1
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 3.8e-58 228.8 242 51.2
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 6.4e-58 228.0 177 63.8
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.1e-57 227.3 198 57.6
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 5.4e-57 224.9 201 58.7
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 2.7e-56 222.6 194 58.2
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.0e-55 220.7 163 64.4
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 1.5e-54 216.9 184 58.2
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 1.5e-54 216.9 185 62.2
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 2.5e-54 216.1 193 57.5
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 4.3e-54 215.3 193 56.0
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 4.8e-53 211.8 178 58.4
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 6.2e-53 211.5 169 60.9
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 8.1e-53 211.1 180 58.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.1e-52 210.7 174 60.9
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.2e-51 207.2 174 59.8
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.5e-51 206.8 181 56.4
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 2.6e-51 206.1 188 55.3
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 9.9e-51 204.1 196 54.6
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 2.9e-50 202.6 189 56.1
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 4.9e-50 201.8 196 55.1
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 4.9e-50 201.8 175 59.4
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 4.9e-50 201.8 185 56.8
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 1.9e-49 199.9 193 55.4
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 3.2e-49 199.1 180 56.7
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 4.2e-49 198.7 194 52.6
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 1.2e-48 197.2 200 53.5
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 2.1e-48 196.4 183 55.2
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.7e-47 193.4 197 51.8
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.3e-46 189.1 168 57.7
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 2.8e-45 186.0 180 53.3
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 1.1e-44 184.1 165 58.2
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.8e-44 183.3 168 54.8
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.8e-44 183.3 152 59.2
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 2.4e-44 183.0 168 54.8
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 2.4e-44 183.0 168 56.0
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 3.1e-44 182.6 168 56.0
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 3.1e-44 182.6 228 45.2
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 5.8e-43 178.3 169 54.4
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 7.6e-43 177.9 158 58.9
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.3e-42 177.2 169 53.8
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 1.7e-42 176.8 195 51.3
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 1.7e-42 176.8 195 51.3
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.2e-42 176.4 195 51.3
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 3.8e-42 175.6 179 52.0
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.4e-41 173.7 169 56.2
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 1.9e-41 173.3 195 50.3
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 5.5e-41 171.8 195 50.3
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.6e-40 170.2 195 50.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 4.3e-38 162.2 118 66.9
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 1.2e-35 154.1 125 60.0
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.5e-35 153.7 181 44.2
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.7e-34 150.2 184 47.8
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 6.5e-34 148.3 108 71.3
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 9.0e-28 127.9 92 67.4
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.4e-20 104.0 181 38.1
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 9.0e-20 101.3 201 34.8
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.7e-18 97.1 97 53.6
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 3.6e-16 89.4 171 33.3
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 5.9e-11 72.0 113 34.5


User provided reference genes

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