Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 9.1e-87 323.6 165 100.0
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 4.9e-72 274.6 165 82.4
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 5.4e-71 271.2 165 85.5
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 5.4e-63 244.6 149 83.2
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 5.9e-62 241.1 167 77.2
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 1.1e-60 236.9 154 77.9
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 1.9e-60 236.1 166 74.1
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 4.3e-60 235.0 166 74.1
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 5.6e-60 234.6 166 74.1
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 5.6e-60 234.6 167 73.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 7.3e-60 234.2 160 78.8
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 9.5e-60 233.8 166 74.1
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 2.1e-59 232.6 167 76.0
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 1.0e-58 230.3 167 74.3
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 1.0e-58 230.3 162 74.7
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 1.8e-58 229.6 166 74.7
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 2.3e-58 229.2 168 74.4
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 6.8e-58 227.6 167 72.5
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 8.9e-58 227.3 166 71.1
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 1.2e-57 226.9 166 71.7
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 1.2e-57 226.9 167 73.7
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.5e-57 226.5 167 73.7
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 2.0e-57 226.1 166 71.1
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 2.0e-57 226.1 164 71.3
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.6e-57 225.7 167 71.9
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 4.4e-57 224.9 162 74.1
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 5.8e-57 224.6 167 72.5
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 7.5e-57 224.2 160 73.8
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 7.5e-57 224.2 167 70.1
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 7.5e-57 224.2 167 71.9
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 9.8e-57 223.8 166 71.1
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 9.8e-57 223.8 166 71.1
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.7e-56 223.0 167 70.7
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 2.2e-56 222.6 167 71.3
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 2.9e-56 222.2 166 72.3
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 4.9e-56 221.5 166 70.5
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 4.9e-56 221.5 166 70.5
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 6.4e-56 221.1 165 70.9
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.1e-55 220.3 156 72.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.1e-55 220.3 156 72.4
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.9e-55 219.5 167 69.5
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 1.9e-55 219.5 160 72.5
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 1.9e-55 219.5 156 70.5
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 2.4e-55 219.2 149 74.5
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 3.2e-55 218.8 156 71.8
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 4.1e-55 218.4 165 69.1
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 7.0e-55 217.6 156 71.2
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 7.0e-55 217.6 151 74.2
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 7.0e-55 217.6 166 70.5
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 1.2e-54 216.9 163 69.9
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 1.2e-54 216.9 166 68.1
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 2.0e-54 216.1 166 69.9
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 2.0e-54 216.1 165 69.1
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 2.0e-54 216.1 156 69.9
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.0e-54 216.1 167 69.5
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.0e-54 216.1 167 69.5
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 3.5e-54 215.3 156 70.5
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 4.6e-54 214.9 156 69.9
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 4.6e-54 214.9 156 69.9
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 4.6e-54 214.9 121 83.5
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 6.0e-54 214.5 166 68.7
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 7.8e-54 214.2 156 70.5
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 7.8e-54 214.2 163 68.1
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 7.8e-54 214.2 121 83.5
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 7.8e-54 214.2 121 83.5
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 1.3e-53 213.4 165 69.1
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 1.3e-53 213.4 164 70.1
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.7e-53 213.0 135 77.0
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.3e-53 212.6 168 69.0
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 3.0e-53 212.2 164 68.9
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 3.9e-53 211.8 168 68.5
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 3.9e-53 211.8 166 68.1
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 3.9e-53 211.8 165 69.1
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 3.9e-53 211.8 166 68.1
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 3.9e-53 211.8 167 66.5
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 1.1e-52 210.3 161 69.6
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 1.5e-52 209.9 166 66.3
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 1.9e-52 209.5 122 80.3
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.9e-52 209.5 167 66.5
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 5.6e-52 208.0 162 65.4
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 5.6e-52 208.0 165 68.5
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 7.3e-52 207.6 155 67.7
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 1.2e-51 206.8 163 66.9
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 1.6e-51 206.5 167 66.5
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.6e-51 206.5 122 81.1
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 2.8e-51 205.7 156 68.6
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 2.8e-51 205.7 165 64.2
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 3.6e-51 205.3 165 65.5
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 4.7e-51 204.9 163 66.3
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 8.1e-51 204.1 167 63.5
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 1.4e-50 203.4 160 68.8
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 1.4e-50 203.4 163 67.5
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 1.8e-50 203.0 162 64.8
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 1.8e-50 203.0 126 76.2
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 2.3e-50 202.6 162 66.0
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 5.2e-50 201.4 152 65.8
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 6.8e-50 201.1 128 75.8
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.5e-49 199.9 166 64.5
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 2.6e-49 199.1 154 66.2
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 3.4e-49 198.7 122 77.9
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 2.9e-48 195.7 150 70.0
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 3.7e-48 195.3 159 66.7
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 4.9e-48 194.9 158 65.8
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 8.3e-48 194.1 118 73.7
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.4e-47 192.6 158 65.2
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 1.2e-46 190.3 119 76.5
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 8.1e-43 177.6 149 61.7
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 1.4e-42 176.8 172 61.0
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 1.7e-40 169.9 151 60.3
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 1.0e-37 160.6 91 82.4
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 1.2e-35 153.7 137 55.5
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 1.8e-34 149.8 138 53.6
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 1.7e-29 133.3 77 77.9
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 8.7e-29 131.0 82 75.6
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 2.5e-28 129.4 148 47.3
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 3.4e-25 119.0 113 61.9
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 4.5e-25 118.6 90 65.6
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 2.2e-24 116.3 90 64.4
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 1.2e-17 94.0 165 47.9
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 2.4e-15 86.3 78 61.5
BolC3t19017H Brassica oleracea HOM05D006548 ORTHO05D008064 6.0e-14 81.6 49 73.5
BraA03t13759Z Brassica rapa HOM05D006548 ORTHO05D008064 1.3e-13 80.5 49 75.5
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 3.0e-13 79.3 125 38.4
SMO119G0279 Selaginella moellendorffii HOM05D006548 ORTHO05D008064 2.8e-11 72.8 121 35.5
Mapoly0113s0043 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.3e-08 63.9 132 33.3


User provided reference genes

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