Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 0.0e+00 1914.0 1003 100.0
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 0.0e+00 1369.0 873 83.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 0.0e+00 1234.6 822 79.9
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 0.0e+00 1223.8 824 79.1
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 0.0e+00 1167.1 830 76.6
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.0e-281 973.8 648 81.5
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.0e-281 973.8 648 81.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.4e-209 734.2 797 53.7
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-209 732.6 444 87.4
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 5.7e-208 728.8 904 49.6
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 2.7e-205 719.9 773 53.7
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.0e-204 718.0 887 49.2
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 9.4e-203 711.4 781 52.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.5e-195 686.8 870 48.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.6e-194 684.1 868 49.0
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 2.8e-194 683.3 843 49.5
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 5.7e-192 675.6 772 50.6
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.7e-191 674.1 841 48.8
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.1e-190 669.8 841 48.4
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.0e-189 667.2 854 48.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.7e-189 666.8 841 48.2
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.3e-188 663.7 704 54.1
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.3e-188 663.7 899 46.1
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.3e-187 659.8 772 50.6
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.6e-186 656.4 857 47.3
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.0e-185 654.8 671 55.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.0e-185 654.8 809 46.8
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 5.2e-185 652.5 900 45.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 9.8e-184 648.3 739 49.9
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 3.5e-181 639.8 685 51.8
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.5e-181 639.8 801 47.3
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 4.6e-181 639.4 736 51.2
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.7e-180 637.5 839 46.6
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 5.0e-180 636.0 862 45.8
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.6e-180 635.2 889 45.4
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.1e-179 634.8 902 44.5
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.9e-179 634.0 797 48.1
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.6e-178 630.9 752 50.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 6.2e-178 629.0 661 52.6
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.8e-177 627.5 886 44.5
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.1e-177 626.7 726 51.4
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 8.9e-177 625.2 711 51.8
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.2e-176 624.8 804 46.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 2.0e-176 624.0 844 45.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.4e-174 617.8 885 44.5
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.9e-174 617.5 811 47.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.1e-174 616.3 906 44.3
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.7e-173 613.6 838 45.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.9e-171 607.4 830 46.3
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.3e-171 606.3 841 45.2
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.6e-170 603.2 834 46.2
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 8.1e-170 602.1 865 43.9
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.8e-169 600.9 876 43.3
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.4e-168 596.7 796 45.6
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 4.4e-168 596.3 803 45.3
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-167 594.3 799 44.8
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 3.7e-167 593.2 852 43.7
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.7e-167 593.2 750 46.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.2e-166 590.1 880 44.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 9.2e-166 588.6 874 42.7
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.2e-165 588.2 816 43.6
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 4.6e-165 586.3 867 43.5
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.7e-164 584.3 842 43.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 2.3e-164 583.9 897 41.4
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.3e-163 580.1 791 44.6
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-162 577.8 844 43.4
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 2.8e-162 577.0 859 42.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 6.2e-162 575.9 872 42.2
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.8e-160 569.3 723 46.9
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.2e-159 567.4 631 50.9
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 3.2e-158 563.5 879 41.1
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.2e-158 563.1 661 49.2
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.2e-157 561.6 658 49.2
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 2.1e-157 560.8 794 44.5
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 4.6e-157 559.7 833 43.2
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 2.3e-156 557.4 819 44.7
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 3.9e-156 556.6 686 46.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 5.1e-156 556.2 870 41.5
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.5e-155 554.7 810 44.1
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.5e-155 554.7 856 44.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 8.1e-154 548.9 671 48.6
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-153 548.1 671 48.7
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-153 548.1 671 48.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 2.4e-153 547.4 795 43.5
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 6.9e-153 545.8 789 43.6
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 9.0e-153 545.4 660 47.6
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 3.4e-152 543.5 853 41.6
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 4.4e-152 543.1 660 47.4
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 7.6e-152 542.3 660 47.3
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.7e-151 541.2 805 43.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.2e-150 537.0 782 42.8
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 5.4e-150 536.2 844 42.7
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 7.1e-150 535.8 900 39.3
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-149 535.0 851 41.4
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 2.1e-149 534.3 833 42.1
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 6.0e-149 532.7 779 44.3
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.3e-146 525.0 543 51.9
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 3.1e-145 520.4 888 39.4
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.7e-143 514.6 630 47.6
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 2.9e-143 513.8 867 39.4
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.8e-143 513.5 662 47.1
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.4e-142 509.6 778 42.0
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 5.4e-142 509.6 822 38.8
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 5.8e-136 489.6 614 47.1
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.4e-134 485.0 798 39.3
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 5.7e-131 473.0 669 42.5
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-124 451.8 899 36.8
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.8e-122 444.1 670 42.5
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.8e-116 422.5 653 40.3
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.9e-113 412.9 706 36.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.0e-111 409.1 796 34.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.4e-107 393.7 687 37.0
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.8e-105 388.3 224 88.8
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.3e-103 382.1 793 35.8
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.2e-102 377.1 694 37.0
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 5.5e-102 376.7 664 41.1
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.2e-101 375.6 500 47.0
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-100 372.1 356 52.2
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.4e-99 367.1 534 44.8
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.5e-96 357.1 711 38.1
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.5e-91 342.0 624 39.7
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.3e-90 339.0 727 35.4
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.8e-90 337.8 664 35.1
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.8e-90 337.8 664 35.1
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.2e-82 311.6 248 62.5
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.1e-81 309.3 625 38.1
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.0e-80 305.1 625 37.8
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.2e-76 290.4 280 52.1
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.2e-73 281.2 181 83.4
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.2e-73 281.2 334 48.2
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 6.6e-71 273.5 773 31.0
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.3e-66 256.5 157 80.9
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 3.5e-56 224.6 354 43.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 3.6e-53 214.5 498 31.3
CsaV3_5G035490 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.4e-52 212.6 187 66.3
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.8e-52 212.2 481 32.6
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.5e-51 209.1 638 29.6
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.9e-49 202.2 590 32.9
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.6e-45 189.1 196 52.6
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 4.0e-44 184.5 338 32.8
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 6.4e-42 177.2 142 57.7
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 4.6e-40 171.0 147 59.9
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.6e-39 167.2 260 44.2
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 8.1e-37 160.2 241 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.9e-36 157.1 343 35.3
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 9.0e-36 156.8 236 42.4
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-34 152.9 231 41.6
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 8.4e-34 150.2 125 60.0
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.2e-32 146.4 184 42.4
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.0e-31 143.3 427 31.4
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 1.7e-31 142.5 279 39.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 1.7e-31 142.5 125 59.2
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.3e-31 142.1 123 57.7
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-28 133.3 136 50.0
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.1e-25 123.2 137 51.1
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.1e-25 123.2 296 34.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 3.5e-24 118.2 144 45.1
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.6e-24 117.9 278 34.2
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-23 115.5 123 48.8
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 8.7e-23 113.6 106 52.8
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 8.7e-23 113.6 106 52.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.3e-22 111.3 220 39.5
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 6.9e-20 104.0 90 62.2
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 3.4e-19 101.7 90 61.1
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.8e-19 100.9 267 34.8
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 4.2e-17 94.7 82 52.4
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 4.2e-17 94.7 82 52.4
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 4.2e-17 94.7 82 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 9.3e-17 93.6 138 39.1
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 2.1e-16 92.4 82 58.5
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.9e-15 88.2 82 50.0
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-13 83.2 88 43.2
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.6e-13 82.8 134 43.3
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.7e-13 81.6 60 66.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.1e-12 80.1 76 55.3
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.3e-12 77.8 251 31.9
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 9.0e-12 77.0 72 51.4
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-11 75.9 72 50.0
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.2e-10 72.4 75 50.7
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 9.3e-09 67.0 55 54.5
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 8.7e-07 60.5 171 32.7
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 1.5e-06 59.7 56 50.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 2.5e-06 58.9 178 34.8
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 9.7e-06 57.0 259 26.3


User provided reference genes

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