Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 2.0e-35 151.8 70 100.0
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 2.6e-27 124.8 66 86.4
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 7.9e-24 113.2 67 82.1
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 2.0e-19 98.6 64 73.4
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.0e-18 96.3 64 71.9
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 2.2e-18 95.1 68 70.6
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.8e-18 94.4 68 69.1
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.0e-18 94.0 59 76.3
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 5.0e-18 94.0 64 71.9
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 6.5e-18 93.6 64 68.8
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 8.5e-18 93.2 62 71.0
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.1e-17 92.8 64 70.3
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.2e-17 91.3 68 67.6
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 3.2e-17 91.3 59 69.5
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.2e-17 90.9 62 71.0
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 4.2e-17 90.9 69 65.2
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 5.5e-17 90.5 64 62.5
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 5.5e-17 90.5 68 67.6
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 7.2e-17 90.1 62 69.4
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.2e-16 89.4 57 75.4
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 1.2e-16 89.4 63 68.3
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-16 89.0 61 68.9
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.6e-16 87.8 63 69.8
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 3.6e-16 87.8 63 69.8
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 8.0e-16 86.7 56 71.4
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 8.0e-16 86.7 54 75.9
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.0e-15 86.3 58 70.7
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.4e-15 85.9 55 74.5
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 1.8e-15 85.5 59 67.8
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 1.8e-15 85.5 62 69.4
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 1.8e-15 85.5 62 69.4
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 2.3e-15 85.1 54 72.2
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 2.3e-15 85.1 69 63.8
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 3.9e-15 84.3 59 69.5
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 3.9e-15 84.3 58 70.7
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 5.2e-15 84.0 55 72.7
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.2e-15 84.0 57 70.2
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.2e-15 84.0 57 70.2
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 5.2e-15 84.0 59 71.2
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 5.2e-15 84.0 55 74.5
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 6.7e-15 83.6 62 59.7
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 6.7e-15 83.6 59 67.8
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 6.7e-15 83.6 55 72.7
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 8.8e-15 83.2 55 69.1
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.1e-14 82.8 59 66.1
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.1e-14 82.8 55 70.9
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 1.1e-14 82.8 63 65.1
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 1.1e-14 82.8 63 65.1
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 2.0e-14 82.0 55 72.7
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 2.6e-14 81.6 69 63.8
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 2.6e-14 81.6 69 63.8
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 2.6e-14 81.6 69 63.8
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.3e-14 81.3 62 62.9
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 3.3e-14 81.3 62 62.9
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 3.3e-14 81.3 62 62.9
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 3.3e-14 81.3 55 69.1
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-14 81.3 57 70.2
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 3.3e-14 81.3 71 63.4
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 4.4e-14 80.9 55 70.9
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 4.4e-14 80.9 64 67.2
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 5.7e-14 80.5 59 61.0
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 5.7e-14 80.5 57 68.4
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 5.7e-14 80.5 69 63.8
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-13 79.3 63 63.5
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 1.3e-13 79.3 57 63.2
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.3e-13 79.3 63 65.1
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 1.3e-13 79.3 59 64.4
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 1.7e-13 79.0 55 69.1
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 66.1
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 66.1
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.2e-13 78.6 57 68.4
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.2e-13 78.6 62 66.1
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.8e-13 78.2 55 65.5
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.8e-13 78.2 66 60.6
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 2.8e-13 78.2 55 69.1
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 3.7e-13 77.8 54 70.4
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.7e-13 77.8 54 70.4
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.7e-13 77.8 54 70.4
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 3.7e-13 77.8 54 70.4
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 3.7e-13 77.8 59 66.1
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 3.7e-13 77.8 59 67.8
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 3.7e-13 77.8 59 66.1
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 3.7e-13 77.8 72 58.3
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.7e-13 77.8 69 60.9
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 3.7e-13 77.8 59 67.8
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 3.7e-13 77.8 54 70.4
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.8e-13 77.4 59 67.8
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 4.8e-13 77.4 59 67.8
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 4.8e-13 77.4 61 63.9
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 4.8e-13 77.4 55 63.6
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 4.8e-13 77.4 56 69.6
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 4.8e-13 77.4 55 69.1
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 8.2e-13 76.6 55 69.1
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.4e-12 75.9 69 59.4
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 1.4e-12 75.9 50 66.0
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 1.8e-12 75.5 55 61.8
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 1.8e-12 75.5 59 62.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 1.8e-12 75.5 63 60.3
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.8e-12 75.5 67 58.2
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 2.4e-12 75.1 55 67.3
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 4.1e-12 74.3 55 65.5
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 4.1e-12 74.3 55 65.5
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 4.1e-12 74.3 57 64.9
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 4.1e-12 74.3 69 56.5
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 5.3e-12 73.9 55 65.5
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 5.3e-12 73.9 59 64.4
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 7.0e-12 73.6 55 67.3
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 1.2e-11 72.8 55 67.3
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 1.6e-11 72.4 55 61.8
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 1.6e-11 72.4 54 64.8
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 1.6e-11 72.4 55 63.6
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 2.0e-11 72.0 55 63.6
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 4.5e-11 70.9 41 78.0
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 5.9e-11 70.5 55 65.5
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 7.7e-11 70.1 55 61.8
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 7.7e-11 70.1 55 58.2
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 1.3e-10 69.3 55 61.8
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 1.3e-10 69.3 55 61.8
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 1.3e-10 69.3 55 61.8
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.9e-10 68.2 55 58.2
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 8.5e-10 66.6 57 57.9
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.5e-09 65.9 55 58.2
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 1.2e-08 62.8 40 70.0
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 3.6e-08 61.2 59 54.2
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 5.2e-07 57.4 41 68.3


User provided reference genes

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